RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CLPSP04118 112 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 SOD3P08294 240 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 PSG7Q13046 419 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 LYRM7Q5U5X0 104 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF600Q6ZNG1 722 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 DMRTA2Q96SC8 542 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 GABARAPL1Q9H0R8 117 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 GNG13Q9P2W3 67 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 DLG5Q8TDM6 1919 aa7.06□□□□□ -1.28
HMGB1-203ENST00000341423 PRRC2AP48634 2157 aaKnown RBP7.06□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF14P17017 642 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 MAS1LP35410 378 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 EFNB3Q15768 340 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 TTC9CQ8N5M4 171 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 LFNGQ8NES3 379 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 BLNKQ8WV28 456 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 SIGLEC8Q9NYZ4 499 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 S100A1P23297 94 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF660Q6AZW8 331 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 RPRMLQ8N4K4 120 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 ZNRF4Q8WWF5 429 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 NEU1Q99519 415 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 SLC45A2Q9UMX9 530 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 MYH7P12883 1935 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 TRAV14DV4A0A0A6YYC5 116 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 H7BYZ3 331 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 GASTP01350 101 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 CFHR2P36980 270 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 UBA52P62987 128 aaKnown RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 IGLV3-21P80748 117 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 PDZK1IP1Q13113 114 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 CFAP161Q6P656 301 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 CYP4V2Q6ZWL3 525 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 SPATA3Q8NHX4 192 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 WNT10AQ9GZT5 417 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 ZDHHC18Q9NUE0 388 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 MRM2Q9UI43 246 aaKnown RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 LOC102724200A0A096LPH7 203 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 IGHV3-49A0A0A0MS15 119 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 NOTOA8MTQ0 251 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 CA1P00915 261 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 HBZP02008 142 aa7.05□□□□□ -1.28
HMGB1-203ENST00000341423 RPL15P61313 204 aaKnown RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF256Q9Y2P7 627 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-203ENST00000341423 H7C1H1 209 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 BGLAPP02818 100 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 KLF9Q13886 244 aaPredicted RBP7.04□□□□□ -1.28
HMGB1-203ENST00000341423 SUMF2Q8NBJ7 301 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 GPX8Q8TED1 209 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF488Q96MN9 340 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 GORASP2Q9H8Y8 452 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 TRDCB7Z8K6 153 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 ANKRD65E5RJM6 399 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 IFI6P09912 130 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 OR9G9P0C7N8 305 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 ALOX5APP20292 161 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 CD24P25063 80 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 SYNJ2BPP57105 145 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 BTN1A1Q13410 526 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 SYS1Q8N2H4 156 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 DCSTAMPQ9H295 470 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 GPR27Q9NS67 375 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 PEF1Q9UBV8 284 aaKnown RBP7.04□□□□□ -1.28
HMGB1-203ENST00000341423 OR51B2Q9Y5P1 312 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 SORL1Q92673 2214 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 A0A1B0GV50 99 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF815PA8K554 130 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 M0R036 132 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 SYNGR2O43760 224 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 PMP2P02689 132 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 PKIAP61925 76 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 RUNX1Q01196 453 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 TMEM268Q5VZI3 342 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 NDUFA11Q86Y39 141 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 QTRT1Q9BXR0 403 aaKnown RBP7.04□□□□□ -1.28
HMGB1-203ENST00000341423 EIF5A2Q9GZV4 153 aaKnown RBP7.04□□□□□ -1.28
HMGB1-203ENST00000341423 ECM29Q5VYK3 1845 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 LRRC37AA6NMS7 1700 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 ARAP2Q8WZ64 1704 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 NAP1L6A6NFF2 107 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 CGB1A6NKQ9 187 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 HYPMO75409 117 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 OR2H2O95918 312 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 KLRD1Q13241 179 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 RHEBQ15382 184 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 SPANXN1Q5VSR9 72 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 CNIH2Q6PI25 160 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 LSMEM1Q8N8F7 131 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 NUDT10Q8NFP7 164 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 LSM10Q969L4 123 aaKnown RBP7.04□□□□□ -1.28
HMGB1-203ENST00000341423 NUDT11Q96G61 164 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 TMEM82A0PJX8 343 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 IL11P20809 199 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 CD1BP29016 333 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 FAM169BQ8N8A8 192 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 GPR32P1Q8NGA4 272 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 RHOVQ96L33 236 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 SORT1Q99523 831 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 SCN5AQ14524 2016 aa7.04□□□□□ -1.28
HMGB1-203ENST00000341423 TDRD15B5MCY1 1934 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms