RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SNRNP70P08621 437 aaKnown RBP5.83□□□□□ -1.48
SF3B1-201ENST00000335508 CT45A10P0DMU9 189 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 PPIAL4GP0DN37 164 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 PSG2P11465 335 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 USF1P22415 310 aaPredicted RBP5.83□□□□□ -1.48
SF3B1-201ENST00000335508 NPY1RP25929 384 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 HSPE1P61604 102 aaKnown RBP5.83□□□□□ -1.48
SF3B1-201ENST00000335508 C9orf152Q5JTZ5 239 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 ACP7Q6ZNF0 438 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 CLEC7AQ9BXN2 247 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 CBLN4Q9NTU7 201 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 MTCH1Q9NZJ7 389 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 SIGLEC5O15389 551 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 CSN1S1P47710 185 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 SLC38A11Q08AI6 406 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 NCR3LG1Q68D85 454 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 TBC1D26Q86UD7 250 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 LINC01560Q8TB33 94 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 TMEM230Q96A57 120 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 DAZAP1Q96EP5 407 aaKnown RBP5.83□□□□□ -1.48
SF3B1-201ENST00000335508 SLC45A2Q9UMX9 530 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 WSB1Q9Y6I7 421 aa5.83□□□□□ -1.48
SF3B1-201ENST00000335508 A0A087WV48 116 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 FOXF2Q12947 444 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 ZNF474Q6S9Z5 364 aaPredicted RBP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 BORCS7Q96B45 105 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 ST6GAL2Q96JF0 529 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 SOSTQ9BQB4 213 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 NCOR1P1Q9H4R4 102 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OOSP1A8MZH6 123 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 E9PQ18 207 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OR2A4O95047 310 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 CFDP00746 253 aaPredicted RBP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 RAB5BP61020 215 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 DEFA6Q01524 100 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 ALKBH6Q3KRA9 238 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 PHYHD1Q5SRE7 291 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 C16orf54Q6UWD8 224 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OR4C13Q8NGP0 309 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OR2A7Q96R45 310 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 SMDT1Q9H4I9 107 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OPN1MWP04001 364 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OPN1MW2P0DN77 364 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OPN1MW3P0DN78 364 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 COL10A1Q03692 680 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OR52M1Q8NGK5 317 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OR5C1Q8NGR4 320 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 SSSCA1O60232 199 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 NPBWR2P48146 333 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 DSCR9P59020 149 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 ZNF816Q0VGE8 651 aaPredicted RBP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 ASCL4Q6XD76 172 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 LSM10Q969L4 123 aaKnown RBP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 GRAMD2BQ96HH9 432 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 IGHV3-43A0A0B4J1X8 118 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 NAPSAO96009 420 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OR5G3P0C626 314 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 IGHV3-43DP0DP04 118 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 POLR2GP62487 172 aaKnown RBP eCLIP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 RPL8P62917 257 aaKnown RBP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 HTD2P86397 168 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 CHRDL1Q9BU40 450 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 RPUSD1Q9UJJ7 312 aaKnown RBP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 TRAV39A0A0B4J263 110 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 DEFB108AA8MXU0 73 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 H7BYZ3 331 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 PDGFAP04085 211 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 ZNF250P15622 560 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 KLK2P20151 261 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 EFNA4P52798 201 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 SRSF7Q16629 238 aaKnown RBP eCLIP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 MOGAT2Q3SYC2 334 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 MBNL2Q5VZF2 373 aaKnown RBP5.82□□□□□ -1.48
SF3B1-201ENST00000335508 C1QL2Q7Z5L3 287 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 TMEM252Q8N6L7 170 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 TPRX1Q8N7U7 411 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 OR52L2PQ8NGH6 319 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 MRGPRFQ96AM1 343 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 ONECUT1Q9UBC0 465 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 WASHC3Q9Y3C0 194 aa5.82□□□□□ -1.48
SF3B1-201ENST00000335508 KBTBD11-OT1A0A1B0GTJ5 212 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 J3QR06 171 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 LDLRAD4O15165 306 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 TGOLN2O43493 480 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 LMX1BO60663 402 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 RHOBP62745 196 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 KCNK15Q9H427 330 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 IDI2-AS1Q9NZ38 188 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 FBXL17Q9UF56 701 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 TRBV6-7A0A0A0MS04 114 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 TNFSF12O43508 249 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 SLC25A4P12235 298 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 CD80P33681 288 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 GLIPR1P48060 266 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 NR2C2APQ86WQ0 139 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 OR52B4Q8NGK2 314 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 MRPL37Q9BZE1 423 aaKnown RBP5.81□□□□□ -1.48
SF3B1-201ENST00000335508 IGHV1-18A0A0C4DH31 117 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 LY6DQ14210 128 aa5.81□□□□□ -1.48
SF3B1-201ENST00000335508 FAM209BQ5JX69 171 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms