RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 AMELYQ99218 206 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 RBKSQ9H477 322 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 TMEM238LA0A1B0GVL6 79 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 A6NJY4 79 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 F5H697 171 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 TMEM250H0YL14 139 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 J3QT63 122 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 OR52M1Q8NGK5 317 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 RAB37Q96AX2 223 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 GDF15Q99988 308 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 MRPL37Q9BZE1 423 aaKnown RBP9.95□□□□□ -0.82
VPS39-201ENST00000318006 TPRP12270 2363 aaKnown RBP9.95□□□□□ -0.82
VPS39-201ENST00000318006 RNF222A6NCQ9 220 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 HPRT1P00492 218 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 HLA-DRB1P01911 266 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 CTHRC1Q96CG8 243 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 QTRT1Q9BXR0 403 aaKnown RBP9.95□□□□□ -0.82
VPS39-201ENST00000318006 GAL3ST2Q9H3Q3 398 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 GPR35Q9HC97 309 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 CACNA1IQ9P0X4 2223 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 LCN2P80188 198 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 OR2H1Q9GZK4 316 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 RNF122Q9H9V4 155 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 FZR1Q9UM11 496 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 MSGN1A6NI15 193 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 GZMHP20718 246 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 TCTAP57738 103 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 FHL5Q5TD97 284 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 CRIPAKQ8N1N5 446 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 PMCHL2Q9BQD1 86 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 CXXC4Q9H2H0 198 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 A0A0G2JK05 382 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 A0A0U1RQV5 110 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 hADV38S2A0JD32 116 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 BTF3P20290 206 aaKnown RBP9.94□□□□□ -0.82
VPS39-201ENST00000318006 ACP1P24666 158 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 DLX1P56177 255 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 C3AR1Q16581 482 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 C2orf68Q2NKX9 166 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 OR5R1Q8NH85 324 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 ZCCHC14Q8WYQ9 949 aaKnown RBP9.94□□□□□ -0.82
VPS39-201ENST00000318006 DNASE2BQ8WZ79 361 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 TMEM45BQ96B21 275 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 ZNF385AQ96PM9 386 aaKnown RBP9.94□□□□□ -0.82
VPS39-201ENST00000318006 DPRXA6NFQ7 191 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 IGHV3-13P01766 116 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 IGHV3-7P01780 117 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 GCSHP23434 173 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 CD40P25942 277 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 CLDN18P56856 261 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 RPL30P62888 115 aaKnown RBP9.94□□□□□ -0.82
VPS39-201ENST00000318006 GALNT14Q96FL9 552 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 CCDC88CQ9P219 2028 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 VENTXO95231 258 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 NIT1Q86X76 327 aa9.94□□□□□ -0.82
VPS39-201ENST00000318006 NPIPB7O75200 414 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 CTSBP07858 339 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 PAXXQ9BUH6 204 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 ZNF256Q9Y2P7 627 aaPredicted RBP9.93□□□□□ -0.82
VPS39-201ENST00000318006 ZDBF2Q9HCK1 2354 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 A0A0J9YW62 118 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 SRP19P09132 144 aaKnown RBP9.93□□□□□ -0.82
VPS39-201ENST00000318006 ATOH7Q8N100 152 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 OR2J1Q9GZK6 312 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 TRAV14DV4A0A0A6YYC5 116 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 BTCP35070 178 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 WNT5AP41221 380 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 KLF3P57682 345 aaPredicted RBP9.93□□□□□ -0.82
VPS39-201ENST00000318006 COL10A1Q03692 680 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 TMEM108Q6UXF1 575 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 TGIF2LYQ8IUE0 185 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 SELENOHQ8IZQ5 122 aaKnown RBP9.93□□□□□ -0.82
VPS39-201ENST00000318006 GBGT1Q8N5D6 347 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 THYN1Q9P016 225 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 TRAV39A0A0B4J263 110 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A26D6RGX4 464 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 K7ESF4 209 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 ORM1P02763 201 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 FGF5P12034 268 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 GPR146Q96CH1 333 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 MIEN1Q9BRT3 115 aa9.93□□□□□ -0.82
VPS39-201ENST00000318006 PSMG3Q9BT73 122 aaPredicted RBP9.93□□□□□ -0.82
VPS39-201ENST00000318006 A0A1W2PR77 199 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 ZNF716A6NP11 495 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 TMEM187Q14656 261 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 KIAA1644Q3SXP7 199 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 ERASQ7Z444 233 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 MMD2Q8IY49 270 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 SAP25Q8TEE9 199 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 MARS2Q96GW9 593 aaKnown RBP9.92□□□□□ -0.82
VPS39-201ENST00000318006 SFRP2Q96HF1 295 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 ALKBH7Q9BT30 221 aaPredicted RBP9.92□□□□□ -0.82
VPS39-201ENST00000318006 AUP1Q9Y679 476 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 LOC107984156A0A0G2JMH3 177 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 CDIPTO14735 213 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 SYNGR1O43759 233 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 ARL17AQ8IVW1 177 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 Q8WTZ3 238 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 RPEQ96AT9 228 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 SOSTQ9BQB4 213 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms