RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SHISA7A6NL88 538 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 NPIPB11E5RHQ5 1161 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 J3QT63 122 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 GNG7O60262 68 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 AKR7A3O95154 331 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TM4SF4P48230 202 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 EWSR1Q01844 656 aaKnown RBP eCLIP4.59□□□□□ -1.67
SCN1A-201ENST00000303395 DEFB133Q30KQ1 61 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 WIPI1Q5MNZ9 446 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-201ENST00000303395 RHBDD2Q6NTF9 364 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 DTX2Q86UW9 622 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 NR2C2APQ86WQ0 139 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 UBE2DNLQ8IWF7 75 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TMEM251Q8N6I4 163 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 OR10J6PQ8NGY7 276 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 HIST1H4GQ99525 98 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TMUB1Q9BVT8 246 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 IL21Q9HBE4 155 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TMEM56-RWDD3S4R434 201 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 LOC389332A0A1B0GUA5 103 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 C17orf51A8MQB3 221 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 PPYP01298 95 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 IGHV4-34P06331 123 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 TNFRSF1BP20333 461 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 ERVFRD-1P60508 538 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 TWIST1Q15672 202 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 TP53INP2Q8IXH6 220 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 SELENOHQ8IZQ5 122 aaKnown RBP4.59□□□□□ -1.68
SCN1A-201ENST00000303395 SPEM1Q8N4L4 309 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 MRPL43Q8N983 215 aaKnown RBP4.59□□□□□ -1.68
SCN1A-201ENST00000303395 CACNG8Q8WXS5 425 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 SIPA1L1O43166 1804 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 TRAV34A0A0B4J273 112 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 A0A1W2PS18 150 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 NKX2-8O15522 239 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 SRD5A2P31213 254 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 RAC3P60763 192 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 LCN15Q6UWW0 184 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 MOGAT3Q86VF5 341 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 GCSAMQ8N6F7 178 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 OR13H1Q8NG92 308 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 OR52E5Q8NH55 327 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 CLDN23Q96B33 292 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 RAX2Q96IS3 184 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 TANC2Q9HCD6 1990 aa4.59□□□□□ -1.68
SCN1A-201ENST00000303395 TRBV6-6A0A0A6YYG2 114 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 FFAR1O14842 300 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 FRS3O43559 492 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 S1PR2O95136 353 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 P01737 135 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 BGLAPP02818 100 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CXCL2P19875 107 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CXCL3P19876 107 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 LYZP61626 148 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 DEFB110Q30KQ9 67 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 IER5LQ5T953 404 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 DNM1P46Q6ZS02 220 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 LHFPL4Q7Z7J7 247 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 OR2K2Q8NGT1 345 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CHCHD1Q96BP2 118 aaKnown RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 ADAT3Q96EY9 351 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF665Q9H7R5 613 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 SLCO1C1Q9NYB5 712 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 TSC2P49815 1807 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 A0A1B0GTH9 108 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 HLA-DRB1P01911 266 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 ASAH2BP0C7U1 165 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 INSM1Q01101 510 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF658BQ4V348 819 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 GCSAMLQ5JQS6 135 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CTU1Q7Z7A3 348 aaKnown RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 FAM24BQ8N5W8 94 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 DEFB108BQ8NET1 73 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 FDCSPQ8NFU4 85 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 PHLDA3Q9Y5J5 127 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 MASP2O00187 686 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 KLKB1P03952 638 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 FTH1P19P0C7X4 201 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 FAM157BP0CG42 384 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CFAP161Q6P656 301 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 KIRREL2Q6UWL6 708 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 TNFRSF12AQ9NP84 129 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 PIPOXQ9P0Z9 390 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 TNS1Q9HBL0 1735 aaKnown RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 ABCA2Q9BZC7 2435 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 IGKV3-7A0A075B6H7 116 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CRPP02741 224 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 HPXP02790 462 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 GPX4P36969 197 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 PRICKLE4Q2TBC4 344 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 LRRC75BQ2VPJ9 315 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 SNAI3Q3KNW1 292 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 FNDC7Q5VTL7 733 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 LAIR2Q6ISS4 152 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 ARPC1AQ92747 370 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 IL17FQ96PD4 163 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CDX2Q99626 313 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 F8WEM9 126 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 RPL36A-HNRNPH2H7BZ11 118 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CHST1O43916 411 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms