RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PLAURQ03405 335 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 COA6Q5JTJ3 125 aaKnown RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 WNT2BQ93097 391 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 SF3B5Q9BWJ5 86 aaKnown RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 G6PC2Q9NQR9 355 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 COA3Q9Y2R0 106 aaPredicted RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 IGKV3D-11A0A0A0MRZ8 115 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 LRRC30A6NM36 301 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 DUX1O43812 170 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 IGKV3-11P04433 115 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 RAB1CQ92928 201 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 MAP1LC3AQ9H492 121 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 CISD1Q9NZ45 108 aaKnown RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 CCL26Q9Y258 94 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 SELENOKQ9Y6D0 94 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 WNT5AP41221 380 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 GFRA1P56159 465 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 OCIAD2Q56VL3 154 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 SPANXN1Q5VSR9 72 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 WDR25Q64LD2 544 aaPredicted RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 ATRAIDQ6UW56 229 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 ZNF114Q8NC26 417 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 OR10V1Q8NGI7 309 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 OR8B2Q96RD0 313 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 RARRES2Q99969 163 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 HCFC2Q9Y5Z7 792 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 PCNTO95613 3336 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 IGKV3D-15A0A087WSY6 115 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 LINC00587B1AMM8 73 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 PAGE4O60829 102 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 IGKV3-15P01624 115 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 IGHV2-70P01814 119 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 UCP1P25874 307 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 DUSP2Q05923 314 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 ZNF750Q32MQ0 723 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 OTPQ5XKR4 325 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 MOB3BQ86TA1 216 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 OR4P4Q8NGL7 312 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 TIMD4Q96H15 378 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 NDUFAF3Q9BU61 184 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 HES7Q9BYE0 225 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 PRR13Q9NZ81 148 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 TDRD15B5MCY1 1934 aaKnown RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 TTC3P53804 2025 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 A0A1B0GU03 582 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 GDF9O60383 454 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 HLA-DRB1P01911 266 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 GLIPR1P48060 266 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 INSM1Q01101 510 aaPredicted RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 ANKRD37Q7Z713 158 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 NOXO1Q8NFA2 376 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 ASB10Q8WXI3 467 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 PCGF1Q9BSM1 259 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 AICDAQ9GZX7 198 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 TMEM160Q9NX00 188 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 MRPS17Q9Y2R5 130 aaKnown RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 PRRT4C9JH25 899 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 FCGR3BO75015 233 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 RAB9AP51151 201 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 TMPRSS3P57727 454 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 SHBQ15464 509 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 ZNF788Q6ZQV5 615 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 SLC25A26Q70HW3 274 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 PRNTQ86SH4 94 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 SFTPA2Q8IWL1 248 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 SFTPA1Q8IWL2 248 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 BOD1Q96IK1 185 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 RNF126Q9BV68 326 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 RAB1BQ9H0U4 201 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 ANKRD10Q9NXR5 420 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 DHCR7Q9UBM7 475 aaKnown RBP5.57□□□□□ -1.52
VPS35-201ENST00000299138 IGLV3-32A0A0A0MS00 114 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 PRTN3P24158 256 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 CEACAM6P40199 344 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 DUSP3P51452 185 aaPredicted RBP5.57□□□□□ -1.52
VPS35-201ENST00000299138 P2RY4P51582 365 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 MFAP2P55001 183 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 SLC25A53Q5H9E4 307 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 BIVMQ86UB2 503 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 LYPD6Q86Y78 171 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 CYSLTR1Q9Y271 337 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 WIPI2Q9Y4P8 454 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 LINC00614P0C842 121 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 ZNF708P17019 499 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 LPAR6P43657 344 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 ATP5IP56385 69 aaPredicted RBP5.57□□□□□ -1.52
VPS35-201ENST00000299138 TBC1D28Q2M2D7 210 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 ACER2Q5QJU3 275 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 SGMS2Q8NHU3 365 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 TBC1D29Q9UFV1 150 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 A0A1W2PP11 408 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 PPP1CCP36873 323 aaKnown RBP5.57□□□□□ -1.52
VPS35-201ENST00000299138 TNFSF10P50591 281 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 FUT6P51993 359 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 ALKBH6Q3KRA9 238 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 OLIG3Q7RTU3 272 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 SH2D2AQ9NP31 389 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 C5orf49A4QMS7 147 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 K7EQS6 105 aa5.57□□□□□ -1.52
VPS35-201ENST00000299138 PDCD6O75340 191 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms