RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TRAV39A0A0B4J263 110 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 HBZP02008 142 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 KRTCAP3Q53RY4 240 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 HES3Q5TGS1 186 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 OR11G2Q8NGC1 345 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 PMCHL2Q9BQD1 86 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 NRIP2Q9BQI9 281 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 GGACTQ9BVM4 153 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 TMEM189A5PLL7 270 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 EPHA8P29322 1005 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 HYAL1Q12794 435 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 PARLQ9H300 379 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 TGIF2-C20orf24A0A0A6YYL0 155 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 LIPT2A6NK58 231 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 HLA-DRB1P01911 266 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 GAB4Q2WGN9 574 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 TEPPQ6URK8 271 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 LYZL2Q7Z4W2 148 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 ALX4Q9H161 411 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 C11orf68Q9H3H3 251 aaKnown RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 METTL1Q9UBP6 276 aaKnown RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 KCNK7Q9Y2U2 307 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 PPYP01298 95 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 TNFAIP6P98066 277 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 RTP5Q14D33 572 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 DEFB109BQ30KR1 87 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 MRPL18Q9H0U6 180 aaKnown RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 TRBV23-1A0A0A0MS06 115 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 TRBV5-5A0A0J9YX44 114 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 A0A1W2PRD5 423 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 A0A1W2PRF3 423 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 A0A1W2PRM7 423 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 MOSPD3O75425 235 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 MRPL24Q96A35 216 aaKnown RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 ZAR1Q86SH2 424 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 ZPLD1Q8TCW7 415 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 IGHV1OR21-1A0A087WYE8 117 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 NGFRP08138 427 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 OR10S1Q8NGN2 331 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 SGK494Q96LW2 274 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 CDS2O95674 445 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 CELA2BP08218 269 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 ZNF735P0CB33 412 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 ARF6P62330 175 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 IFITM2Q01629 132 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 ZXDCQ2QGD7 858 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 SYT8Q8NBV8 401 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 CXXC4Q9H2H0 198 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 WIPI2Q9Y4P8 454 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 TMPRSS2O15393 492 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 PRSS2P07478 247 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 IL11RAQ14626 422 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 PGLYRP4Q96LB8 373 aa8.6□□□□□ -1.03
COL6A3-201ENST00000295550 SDHCQ99643 169 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-201ENST00000295550 TMEM210A6NLX4 147 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 ERVH48-1M5A8F1 160 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 TMEM177Q53S58 311 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 DYNLRB2Q8TF09 96 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 HRKO00198 91 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 LEPROTL1O95214 131 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 ECSCRQ19T08 205 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 RHBDD2Q6NTF9 364 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 LINC00596Q86U02 117 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 SP7Q8TDD2 431 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-201ENST00000295550 PTPN13Q12923 2485 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 CENPVL1A0A0U1RR11 272 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 CCL2P13500 99 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 MRPS11P82912 194 aaKnown RBP8.59□□□□□ -1.03
COL6A3-201ENST00000295550 FAM53AQ6NSI3 398 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-201ENST00000295550 CLN8Q9UBY8 286 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 RABAC1Q9UI14 185 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 GFRALQ6UXV0 394 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 IL36RNQ9UBH0 155 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 ASAH2BP0C7U1 165 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 SEC11BP0C7V7 166 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 ZNF32P17041 273 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 NANOS3P60323 173 aaKnown RBP8.59□□□□□ -1.03
COL6A3-201ENST00000295550 NUDT10Q8NFP7 164 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 OR10AG1Q8NH19 301 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 NUDT11Q96G61 164 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 MUC4Q99102 2169 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 TNFSF18Q9UNG2 199 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 SAMD13Q5VXD3 122 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 TMEM92Q6UXU6 159 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 LINC00518Q8N0U6 118 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 GMPPAQ96IJ6 420 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-201ENST00000295550 ALKBH7Q9BT30 221 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-201ENST00000295550 MAP1LC3AQ9H492 121 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 NEU1Q99519 415 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 FAM117AQ9C073 453 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 WNT5BQ9H1J7 359 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 RNF122Q9H9V4 155 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 FAM60AQ9NP50 221 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 PLXNA2O75051 1894 aa8.59□□□□□ -1.03
COL6A3-201ENST00000295550 MAS1LP35410 378 aa8.59□□□□□ -1.04
COL6A3-201ENST00000295550 SPAG8Q99932 426 aaPredicted RBP8.59□□□□□ -1.04
COL6A3-201ENST00000295550 HSPB7Q9UBY9 170 aa8.59□□□□□ -1.04
COL6A3-201ENST00000295550 MYO18BQ8IUG5 2567 aa8.59□□□□□ -1.04
COL6A3-201ENST00000295550 SPINT1O43278 529 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 ZNF273Q14593 569 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms