RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 IAPPP10997 89 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 PLA2G5P39877 138 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 CARD18P57730 90 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 RPL19P84098 196 aaKnown RBP11.16□□□□□ -0.62
NUP54-201ENST00000264883 Q6ZS49 121 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 SHISA6Q6ZSJ9 500 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 OSR2Q8N2R0 312 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 CSTL1Q9H114 145 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 SEPSECSQ9HD40 501 aaKnown RBP11.16□□□□□ -0.62
NUP54-201ENST00000264883 PLEK2Q9NYT0 353 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 PSENENQ9NZ42 101 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 C19orf25Q9UFG5 118 aaPredicted RBP11.16□□□□□ -0.62
NUP54-201ENST00000264883 ST3GAL6Q9Y274 331 aa11.16□□□□□ -0.62
NUP54-201ENST00000264883 A0A0G2JRQ6 117 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 NPIPA2E9PIF3 369 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 NPIPA3F8WFD2 350 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 LAMTOR5O43504 91 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 PAGE4O60829 102 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 GLB1P16278 677 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 MALLQ13021 153 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 RNPS1Q15287 305 aaKnown RBP11.15□□□□□ -0.62
NUP54-201ENST00000264883 RSPO1Q2MKA7 263 aaPredicted RBP11.15□□□□□ -0.62
NUP54-201ENST00000264883 FAM27BQ5VT28 67 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 FAM69BQ5VUD6 431 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 TMEM42Q69YG0 159 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 HAPLN4Q86UW8 402 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 C1orf210Q8IVY1 113 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 OR10G3Q8NGC4 313 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 TAF15Q92804 592 aaKnown RBP eCLIP11.15□□□□□ -0.62
NUP54-201ENST00000264883 GPR146Q96CH1 333 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 SPACA9Q96E40 222 aaPredicted RBP11.15□□□□□ -0.62
NUP54-201ENST00000264883 OR4C12Q96R67 309 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 ASXL3Q9C0F0 2248 aa11.15□□□□□ -0.62
NUP54-201ENST00000264883 CTXND1A0A1B0GTU2 59 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A10PA6NDY2 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A18PA6NE21 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A16PA6NEW6 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A20PA6NIJ5 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A8PA6NJQ4 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A7PA6NKC0 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A22PA8MWA6 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 KIAA1324LA8MWY0 1029 aaPredicted RBP11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A12PA8MX19 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A5PA8MXJ8 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A23PA8MXZ1 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 TIAF1O95411 115 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A15PP0C7V4 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A13PP0C7W8 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A14PP0C7W9 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM90A24PP0C7X0 464 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 CRYGSP22914 178 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 CBLN1P23435 193 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 TNFSF4P23510 183 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 PDCD1Q15116 288 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 OR10V1Q8NGI7 309 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 MRPL18Q9H0U6 180 aaKnown RBP11.14□□□□□ -0.63
NUP54-201ENST00000264883 TRAV30A0A087WSZ9 112 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 UBE2L5PA0A1B0GUS4 154 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 TMEM238C9JI98 176 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 F2Z2F3 143 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 SH2D1BO14796 132 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 C1QTNF9P0C862 333 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 NPPCP23582 126 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 PEAR1Q5VY43 1037 aaPredicted RBP11.14□□□□□ -0.63
NUP54-201ENST00000264883 KLHDC1Q8N7A1 406 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 LOXL4Q96JB6 756 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 ZNF442Q9H7R0 627 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 SLC35D1Q9NTN3 355 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 ADAMTS20P59510 1910 aa11.14□□□□□ -0.63
NUP54-201ENST00000264883 FAM166BA8MTA8 275 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 H0Y980 276 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 SYNGR2O43760 224 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 SERPINA7P05543 415 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 GPX1P07203 203 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 FUT6P51993 359 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 RSPO4Q2I0M5 234 aaPredicted RBP11.13□□□□□ -0.63
NUP54-201ENST00000264883 CCL28Q9NRJ3 127 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 MRPS16Q9Y3D3 137 aaKnown RBP11.13□□□□□ -0.63
NUP54-201ENST00000264883 VPS13AQ96RL7 3174 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 IGKV1-27A0A075B6S5 117 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 HSBP1L1C9JCN9 74 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 C11orf94C9JXX5 98 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 DKK1O94907 266 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 TSPOP30536 169 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 Q0VG73 95 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 VAMP3Q15836 100 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 SNAI3Q3KNW1 292 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 OCIAD2Q56VL3 154 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 LDLRAD2Q5SZI1 272 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 ACSM6Q6P461 480 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 SAXO1Q8IYX7 474 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 SFRP2Q96HF1 295 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 ULBP2Q9BZM5 246 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 CST9LQ9H4G1 147 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 TIMM9Q9Y5J7 89 aa11.13□□□□□ -0.63
NUP54-201ENST00000264883 RP1P56715 2156 aa11.12□□□□□ -0.63
NUP54-201ENST00000264883 IGKV1D-13A0A0B4J2D9 117 aa11.12□□□□□ -0.63
NUP54-201ENST00000264883 MDFIC2A0A1B0GVS7 189 aa11.12□□□□□ -0.63
NUP54-201ENST00000264883 TMPRSS2O15393 492 aa11.12□□□□□ -0.63
NUP54-201ENST00000264883 WDR1O75083 606 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms