RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ETFRF1Q6IPR1 90 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 POM121L2Q96KW2 1035 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 C11orf1Q9H5F2 150 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 TP53TG5Q9Y2B4 290 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A10PA6NDY2 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A18PA6NE21 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A16PA6NEW6 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A20PA6NIJ5 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A8PA6NJQ4 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A7PA6NKC0 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A22PA8MWA6 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A12PA8MX19 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A5PA8MXJ8 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A23PA8MXZ1 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 NTN3O00634 580 aaPredicted RBP10.71□□□□□ -0.69
LIG1-201ENST00000263274 LYZL6O75951 148 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A15PP0C7V4 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A13PP0C7W8 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A14PP0C7W9 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 FAM90A24PP0C7X0 464 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 CST9LP1Q5W188 147 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 ZNF525Q8N782 197 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 GATAD1Q8WUU5 269 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 MALSU1Q96EH3 234 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 STRADBQ9C0K7 418 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 IL17BQ9UHF5 180 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 TNFRSF9Q07011 255 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 AESQ08117 197 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 EDDM3AQ14507 147 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 COLCA1Q6ZS62 124 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 TMPRSS7Q7RTY8 843 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 LRP11Q86VZ4 500 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 DRAM1Q8N682 238 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 OR1L1Q8NH94 360 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 HEATR1Q9H583 2144 aaKnown RBP10.71□□□□□ -0.69
LIG1-201ENST00000263274 TMEM9BQ9NQ34 198 aa10.71□□□□□ -0.69
LIG1-201ENST00000263274 LIN7CQ9NUP9 197 aaKnown RBP10.71□□□□□ -0.69
LIG1-201ENST00000263274 NBASA2RRP1 2371 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 DUXBA0A1W2PPF3 345 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 H7BYZ3 331 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 NEURL1O76050 574 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 CYC1P08574 325 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 HNF1AP20823 631 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 FGF7P21781 194 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 CLDN18P56856 261 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 ZNF726P1Q15940 193 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 TMEM164Q5U3C3 297 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 FAM90A2PQ658T7 463 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 CNEP1R1Q8N9A8 125 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 OR52L2PQ8NGH6 319 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 MRGPRDQ8TDS7 321 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 ABHD5Q8WTS1 349 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 RTL8AQ9BWD3 113 aa10.71□□□□□ -0.7
LIG1-201ENST00000263274 WNT9BO14905 357 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 RAMP3O60896 148 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 PSMB3P49720 205 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 LBHQ53QV2 105 aaPredicted RBP10.7□□□□□ -0.7
LIG1-201ENST00000263274 HIST3H2BBQ8N257 126 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 SCCPDHQ8NBX0 429 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 WFIKKN1Q96NZ8 548 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 ZNF703Q9H7S9 590 aaPredicted RBP10.7□□□□□ -0.7
LIG1-201ENST00000263274 VAX2Q9UIW0 290 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 DSPP15924 2871 aaKnown RBP10.7□□□□□ -0.7
LIG1-201ENST00000263274 ADAMTS20P59510 1910 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 A0A1B0GW64 132 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 OR5B21A6NL26 309 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 FFAR4Q5NUL3 377 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 ZNF66Q6ZN08 573 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 C16orf82Q7Z2V1 217 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 TAF15Q92804 592 aaKnown RBP eCLIP10.7□□□□□ -0.76e-7■■■■□ 23.8
LIG1-201ENST00000263274 ZDHHC16Q969W1 377 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 DDA1Q9BW61 102 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 MPC1Q9Y5U8 109 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 BOD1L1Q8NFC6 3051 aa10.7□□□□□ -0.7
LIG1-201ENST00000263274 SH2D1BO14796 132 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 CYB5R3P00387 301 aaPredicted RBP10.69□□□□□ -0.7
LIG1-201ENST00000263274 CRYAAP02489 173 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 CHRNA7P36544 502 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 MEOX1P50221 254 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 FABP6P51161 128 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 TMEM241Q24JQ0 296 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 ATP1A1-AS1Q5TC04 95 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 ABHD14BQ96IU4 210 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 LRP5LA4QPB2 252 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 J3QT63 122 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 SLC10A1Q14973 349 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 CFAP161Q6P656 301 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 HAPLN4Q86UW8 402 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 C1QL4Q86Z23 238 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 OR10G4Q8NGN3 311 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 OR10G9Q8NGN4 311 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 OR10G7Q8NGN6 311 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 OPN3Q9H1Y3 402 aaPredicted RBP10.69□□□□□ -0.7
LIG1-201ENST00000263274 FOXJ2Q9P0K8 574 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 PPP5D1E7EU14 171 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 PTBP3O95758 552 aaKnown RBP10.69□□□□□ -0.7
LIG1-201ENST00000263274 BATFQ16520 125 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 TBC1D28Q2M2D7 210 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 BSXQ3C1V8 233 aa10.69□□□□□ -0.7
LIG1-201ENST00000263274 MRGPRGQ86SM5 289 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms