RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 WDFY1Q8IWB7 410 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 DDB2Q92466 427 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 HSF4Q9ULV5 492 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 TMEM56-RWDD3S4R434 201 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 TMEM189A5PLL7 270 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 KCNAB3O43448 404 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 RCC1P18754 421 aaPredicted RBP16.53■□□□□ 0.24
UPF1-201ENST00000262803 OR52M1Q8NGK5 317 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 TREM2Q9NZC2 230 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 ICE1Q9Y2F5 2266 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 H3BQ15 152 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 BPIFA4PQ86YQ2 179 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 ZNF430Q9H8G1 570 aaPredicted RBP16.52■□□□□ 0.24
UPF1-201ENST00000262803 SVILO95425 2214 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 C17orf51A8MQB3 221 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 UBE2L6O14933 153 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 PAGE4O60829 102 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 RGP1Q92546 391 aaPredicted RBP16.52■□□□□ 0.24
UPF1-201ENST00000262803 C16orf92Q96LL3 132 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 KCNK17Q96T54 332 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 MIEN1Q9BRT3 115 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 ANKRD31Q8N7Z5 1873 aa16.52■□□□□ 0.24
UPF1-201ENST00000262803 RPL29P47914 159 aaKnown RBP16.52■□□□□ 0.23
UPF1-201ENST00000262803 RELQ04864 619 aaPredicted RBP16.52■□□□□ 0.23
UPF1-201ENST00000262803 TM4SF20Q53R12 229 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 ITLN1Q8WWA0 313 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 ZFP30Q9Y2G7 519 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 SYNGR3O43761 229 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 NMBP08949 121 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 MAS1LP35410 378 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 CCL8P80075 99 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 RNFT1Q5M7Z0 435 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 OR9G1Q8NH87 305 aa16.52■□□□□ 0.23
UPF1-201ENST00000262803 TNFSF10P50591 281 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 CSRP2Q16527 193 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 IGLV1-36A0A0B4J1U3 117 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 PQLC2Q6ZP29 291 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 C9orf172C9J069 976 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 PF4V1P10720 104 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 PTGDSP41222 190 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 LINC00470Q9BZP3 86 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 IGHMP01871 453 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 OR5AU1Q8NGC0 362 aa16.51■□□□□ 0.23
UPF1-201ENST00000262803 RHBDL1O75783 438 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 OR2H2O95918 312 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 NUP37Q8NFH4 326 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 ZNF488Q96MN9 340 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 TDRD15B5MCY1 1934 aaKnown RBP16.5■□□□□ 0.23
UPF1-201ENST00000262803 PIN1P1O15428 100 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 UNQ5815/PRO19632Q6UWF5 114 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 LHFPL5Q8TAF8 219 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 TMEM45BQ96B21 275 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 TCL1AP56279 114 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 SRSF9Q13242 221 aaKnown RBP eCLIP16.5■□□□□ 0.23
UPF1-201ENST00000262803 ZNF880Q6PDB4 577 aa16.5■□□□□ 0.23
UPF1-201ENST00000262803 TMEM238LA0A1B0GVL6 79 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 A6NJY4 79 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 NKX2-8O15522 239 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 LIPFP07098 398 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 COX6A1P12074 109 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 GALNT14Q96FL9 552 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 SCARF2Q96GP6 870 aaPredicted RBP16.49■□□□□ 0.23
UPF1-201ENST00000262803 OR5AC2Q9NZP5 309 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 C1orf100Q5SVJ3 147 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 PTPRFP10586 1907 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 COL11A1P12107 1806 aaPredicted RBP16.49■□□□□ 0.23
UPF1-201ENST00000262803 TRAV34A0A0B4J273 112 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 CRXO43186 299 aaPredicted RBP16.49■□□□□ 0.23
UPF1-201ENST00000262803 CELA2AP08217 269 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 ATP5G2Q06055 141 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 AMMECR1LQ6DCA0 310 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 WFDC3Q8IUB2 231 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 CALYQ9NYX4 217 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 GPR132Q9UNW8 380 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 ATAD5Q96QE3 1844 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 SMIM10L1P0DMW3 83 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 SMIM10Q96HG1 83 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 TMEM222Q9H0R3 208 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 TRBV5-7A0A0A0MS05 114 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 IGLV3-21P80748 117 aaPredicted RBP16.49■□□□□ 0.23
UPF1-201ENST00000262803 GUCA2BQ16661 112 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 OR4C12Q96R67 309 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 HS3ST3B1Q9Y662 390 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 PXMP4Q9Y6I8 212 aa16.49■□□□□ 0.23
UPF1-201ENST00000262803 LOC105371242A0A075B767 164 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 PPIAL4CA0A0B4J2A2 164 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 LOC390937A0A1W2PQ73 354 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 CSN3P07498 182 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 PPIAL4GP0DN37 164 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 FAM3BP58499 235 aaPredicted RBP16.48■□□□□ 0.23
UPF1-201ENST00000262803 ADIPOR1Q96A54 375 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 RBM14Q96PK6 669 aaKnown RBP16.48■□□□□ 0.23
UPF1-201ENST00000262803 ALPK2Q86TB3 2170 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 ODAMA1E959 279 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 F12P00748 615 aaPredicted RBP16.48■□□□□ 0.23
UPF1-201ENST00000262803 OR10J1P30954 320 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 ZNF660Q6AZW8 331 aaPredicted RBP16.48■□□□□ 0.23
UPF1-201ENST00000262803 EEF1AKMT3Q96AZ1 226 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 MRPS16Q9Y3D3 137 aaKnown RBP16.48■□□□□ 0.23
UPF1-201ENST00000262803 LMX1BO60663 402 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms