RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 IGKV1-33P01594 117 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 HBE1P02100 147 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 RBX1P62877 108 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 ZNF816Q0VGE8 651 aaPredicted RBP8.5□□□□□ -1.05
LIG3-201ENST00000262327 SLC10A1Q14973 349 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 H1FOOQ8IZA3 346 aaPredicted RBP8.5□□□□□ -1.05
LIG3-201ENST00000262327 ZNF525Q8N782 197 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 CLEC18CQ8NCF0 446 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 Q8NFD4 153 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 OR5P3Q8WZ94 311 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 APH1AQ96BI3 265 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 POM121L2Q96KW2 1035 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 TECTBQ96PL2 329 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 NCOR1P1Q9H4R4 102 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 SLC25A22Q9H936 323 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 ICE1Q9Y2F5 2266 aa8.5□□□□□ -1.05
LIG3-201ENST00000262327 RAMP3O60896 148 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 DFFBO76075 338 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 CLDN1O95832 211 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 CELA3BP08861 270 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 RAC2P15153 192 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 S100GP29377 79 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 CLDN18P56856 261 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 ZNF585BQ52M93 769 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 OR2M7Q8NG81 312 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 PLPPR2Q96GM1 343 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 SMDT1Q9H4I9 107 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 AURKAIP1Q9NWT8 199 aaPredicted RBP8.49□□□□□ -1.05
LIG3-201ENST00000262327 MAP1LC3B2A6NCE7 125 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 M0R143 59 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 CDIPTO14735 213 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 NEURL1O76050 574 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 SYNGR4O95473 234 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 GRPP07492 148 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 FGF7P21781 194 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 PLGLB1Q02325 96 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 PLP2Q04941 152 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 SLC35E3Q7Z769 313 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 OR5A2Q8NGI9 324 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 PACRGQ96M98 296 aaPredicted RBP8.49□□□□□ -1.05
LIG3-201ENST00000262327 CABLES2Q9BTV7 478 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 MAP1LC3BQ9GZQ8 125 aa8.49□□□□□ -1.05
LIG3-201ENST00000262327 A0A087WWC5 75 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 A0A1B0GU03 582 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 IL18BPO95998 194 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 CTXN2P0C2S0 81 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 MDH2P40926 338 aaKnown RBP8.48□□□□□ -1.05
LIG3-201ENST00000262327 PMP22Q01453 160 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 ARSJQ5FYB0 599 aaPredicted RBP8.48□□□□□ -1.05
LIG3-201ENST00000262327 DCAF10Q5QP82 559 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 BTNL3Q6UXE8 466 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 Q6ZS49 121 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 C1orf87Q8N0U7 546 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 LHX4Q969G2 390 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 CLN8Q9UBY8 286 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 BOKQ9UMX3 212 aaPredicted RBP8.48□□□□□ -1.05
LIG3-201ENST00000262327 RP1L1Q8IWN7 2480 aaPredicted RBP8.48□□□□□ -1.05
LIG3-201ENST00000262327 LAMA5O15230 3695 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 SMCO3A2RU48 225 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A10PA6NDY2 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A18PA6NE21 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A16PA6NEW6 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A20PA6NIJ5 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A8PA6NJQ4 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A7PA6NKC0 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A22PA8MWA6 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A12PA8MX19 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A5PA8MXJ8 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A23PA8MXZ1 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 OR2H2O95918 312 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A15PP0C7V4 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A13PP0C7W8 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A14PP0C7W9 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 FAM90A24PP0C7X0 464 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 G6PCP35575 357 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 GNG3P63215 75 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 WDR86Q86TI4 376 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 TPRX1Q8N7U7 411 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 RNASE8Q8TDE3 154 aaKnown RBP8.48□□□□□ -1.05
LIG3-201ENST00000262327 C22orf15Q8WYQ4 148 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 RAB40CQ96S21 281 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 ELOVL1Q9BW60 279 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 ZNF703Q9H7S9 590 aaPredicted RBP8.48□□□□□ -1.05
LIG3-201ENST00000262327 CLDN34H7C241 214 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 ZNF737O75373 536 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 EGR1P18146 543 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 HNF1AP20823 631 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 NHLH1Q02575 133 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 MCEMP1Q8IX19 187 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 RPP25LQ8N5L8 163 aaKnown RBP8.48□□□□□ -1.05
LIG3-201ENST00000262327 OR8G5Q8NG78 346 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 SMIM7Q9BQ49 75 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 PARD6GQ9BYG4 376 aaPredicted RBP8.48□□□□□ -1.05
LIG3-201ENST00000262327 TTTY12Q9BZ98 90 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 DEFB127Q9H1M4 99 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 CBLN4Q9NTU7 201 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 SLC39A9Q9NUM3 307 aa8.48□□□□□ -1.05
LIG3-201ENST00000262327 DUXBA0A1W2PPF3 345 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 A8MXE2 369 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 TCF21O43680 179 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms