RNA–Protein interactions for RNA: ENST00000244745.3

SOX4-201, Transcript of SRY-box 4, humanhuman

APPRIS P1 BASIC

Gene SOX4, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4-201ENST00000244745 C5orf17Q8NAS9 161 aa17.1■□□□□ 0.33
SOX4-201ENST00000244745 CCDC88CQ9P219 2028 aa17.1■□□□□ 0.33
SOX4-201ENST00000244745 HIST1H1EP10412 219 aaKnown RBP17.1■□□□□ 0.33
SOX4-201ENST00000244745 HIST1H1BP16401 226 aaKnown RBP17.1■□□□□ 0.33
SOX4-201ENST00000244745 REG1BP48304 166 aa17.1■□□□□ 0.33
SOX4-201ENST00000244745 UNC119Q13432 240 aa17.1■□□□□ 0.33
SOX4-201ENST00000244745 OR4C12Q96R67 309 aa17.1■□□□□ 0.33
SOX4-201ENST00000244745 TRAV14DV4A0A0A6YYC5 116 aa17.1■□□□□ 0.33
SOX4-201ENST00000244745 ZNF818PQ6ZRF7 136 aa17.1■□□□□ 0.33
SOX4-201ENST00000244745 CLDN14O95500 239 aa17.09■□□□□ 0.33
SOX4-201ENST00000244745 RPS11P62280 158 aaKnown RBP eCLIP17.09■□□□□ 0.33
SOX4-201ENST00000244745 RSPO4Q2I0M5 234 aaPredicted RBP17.09■□□□□ 0.33
SOX4-201ENST00000244745 TAF15Q92804 592 aaKnown RBP eCLIP17.09■□□□□ 0.33
SOX4-201ENST00000244745 C5orf52A6NGY3 159 aa17.09■□□□□ 0.33
SOX4-201ENST00000244745 NFAM1Q8NET5 270 aaPredicted RBP17.09■□□□□ 0.33
SOX4-201ENST00000244745 GAGE10A6NGK3 116 aa17.09■□□□□ 0.33
SOX4-201ENST00000244745 ZNF708P17019 499 aa17.09■□□□□ 0.33
SOX4-201ENST00000244745 SLC25A45Q8N413 288 aa17.09■□□□□ 0.33
SOX4-201ENST00000244745 HOXB1P14653 301 aaPredicted RBP17.08■□□□□ 0.33
SOX4-201ENST00000244745 SLC35E4Q6ICL7 350 aa17.08■□□□□ 0.33
SOX4-201ENST00000244745 EIF4E3Q8N5X7 224 aaKnown RBP17.08■□□□□ 0.33
SOX4-201ENST00000244745 UFC1Q9Y3C8 167 aa17.08■□□□□ 0.33
SOX4-201ENST00000244745 MSGN1A6NI15 193 aa17.08■□□□□ 0.33
SOX4-201ENST00000244745 SAP30LQ9HAJ7 183 aa17.08■□□□□ 0.33
SOX4-201ENST00000244745 PSMB2P49721 201 aa17.08■□□□□ 0.32
SOX4-201ENST00000244745 NPTNQ9Y639 398 aa17.08■□□□□ 0.32
SOX4-201ENST00000244745 PIKFYVEQ9Y2I7 2098 aa17.08■□□□□ 0.32
SOX4-201ENST00000244745 ASPHD2Q6ICH7 369 aa17.08■□□□□ 0.32
SOX4-201ENST00000244745 RASL11BQ9BPW5 248 aa17.08■□□□□ 0.32
SOX4-201ENST00000244745 SNRPCP09234 159 aaKnown RBP17.08■□□□□ 0.32
SOX4-201ENST00000244745 NPBWR2P48146 333 aa17.08■□□□□ 0.32
SOX4-201ENST00000244745 OR4C46A6NHA9 309 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 UCP2P55851 309 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 TGIF2LYQ8IUE0 185 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 OR1L1Q8NH94 360 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 COA4Q9NYJ1 87 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 FBLL1A6NHQ2 334 aaKnown RBP17.07■□□□□ 0.32
SOX4-201ENST00000244745 IL19Q9UHD0 177 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 MFAP2P55001 183 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 NPVFQ9HCQ7 196 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 TMEM140Q9NV12 185 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 GRIFINA4D1Z8 144 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 TBX6O95947 436 aaPredicted RBP17.07■□□□□ 0.32
SOX4-201ENST00000244745 IZUMO4Q1ZYL8 232 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 ZNF826PQ6ZT77 177 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 FGFRL1Q8N441 504 aa17.07■□□□□ 0.32
SOX4-201ENST00000244745 RNF222A6NCQ9 220 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 MT-ND6P03923 174 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 AGAP20933 346 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 NMUP48645 174 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 COMPP49747 757 aaPredicted RBP17.06■□□□□ 0.32
SOX4-201ENST00000244745 SRSF3P84103 164 aaKnown RBP17.06■□□□□ 0.32
SOX4-201ENST00000244745 DLL3Q9NYJ7 618 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 DICER1Q9UPY3 1922 aaKnown RBP17.06■□□□□ 0.32
SOX4-201ENST00000244745 RPL7P18124 248 aaKnown RBP17.06■□□□□ 0.32
SOX4-201ENST00000244745 PMCHL1Q16048 86 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 PAXXQ9BUH6 204 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 ZFP30Q9Y2G7 519 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A10PA6NDY2 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A18PA6NE21 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A16PA6NEW6 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 EPOPA6NHQ4 379 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A20PA6NIJ5 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A8PA6NJQ4 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A7PA6NKC0 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A22PA8MWA6 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A12PA8MX19 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A5PA8MXJ8 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A23PA8MXZ1 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 F5H697 171 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 TGFBR3LH3BV60 316 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 H3BVH4 76 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A15PP0C7V4 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A13PP0C7W8 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A14PP0C7W9 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 FAM90A24PP0C7X0 464 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 OR1L8Q8NGR8 309 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 TMEM54Q969K7 222 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 ZNF71Q9NQZ8 489 aaPredicted RBP17.06■□□□□ 0.32
SOX4-201ENST00000244745 THYN1Q9P016 225 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 IGKV1D-43A0A0B4J1Z2 117 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 AMY1AP04745 511 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 HES7Q9BYE0 225 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 LOC285556D6RIA3 1793 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 MELTFP08582 738 aa17.06■□□□□ 0.32
SOX4-201ENST00000244745 CEACAM3P40198 252 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 C1QL2Q7Z5L3 287 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 OR2V2Q96R30 315 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 LOC389332A0A1B0GUA5 103 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 GNG7O60262 68 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 IGKV3-11P04433 115 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 GOSR1O95249 250 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 IBA57Q5T440 356 aaKnown RBP17.05■□□□□ 0.32
SOX4-201ENST00000244745 CHD5Q8TDI0 1954 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 WNT5BQ9H1J7 359 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 FOXJ2Q9P0K8 574 aa17.05■□□□□ 0.32
SOX4-201ENST00000244745 ZNF729A6NN14 1252 aaPredicted RBP17.04■□□□□ 0.32
SOX4-201ENST00000244745 PRNTQ86SH4 94 aa17.04■□□□□ 0.32
SOX4-201ENST00000244745 ASCC3Q8N3C0 2202 aaKnown RBP17.04■□□□□ 0.32
SOX4-201ENST00000244745 ZNF506Q5JVG8 444 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms