RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 UNQ9370/PRO34162Q6UXP9 181 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 DNASE2BQ8WZ79 361 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 FAM206AQ9NX38 181 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 DIRC3C9JPN6 131 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 ACAA1P09110 424 aaPredicted RBP11.69□□□□□ -0.54
SF3A1-201ENST00000215793 CTSSP25774 331 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 WFDC3Q8IUB2 231 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 VN1R17PQ8TDU5 208 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 AQP10Q96PS8 301 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 TMEM189A5PLL7 270 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 POM121Q96HA1 1249 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 KCNE5Q9UJ90 142 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 PAM16Q9Y3D7 125 aa11.69□□□□□ -0.54
SF3A1-201ENST00000215793 RELBQ01201 579 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 ZNF430Q9H8G1 570 aaPredicted RBP11.68□□□□□ -0.54
SF3A1-201ENST00000215793 NKX2-8O15522 239 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 STARD6P59095 220 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 HSPE1P61604 102 aaKnown RBP11.68□□□□□ -0.54
SF3A1-201ENST00000215793 UNC119Q13432 240 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 CXorf66Q5JRM2 361 aaPredicted RBP11.68□□□□□ -0.54
SF3A1-201ENST00000215793 IBA57Q5T440 356 aaKnown RBP11.68□□□□□ -0.54
SF3A1-201ENST00000215793 CALYQ9NYX4 217 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 LAMB2P55268 1798 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 J3QW42 95 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 ZNF207O43670 478 aaKnown RBP11.68□□□□□ -0.54
SF3A1-201ENST00000215793 MAS1LP35410 378 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 EBLN2Q6P2I7 272 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 ZNF383Q8NA42 475 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 COL25A1Q9BXS0 654 aaPredicted RBP11.68□□□□□ -0.54
SF3A1-201ENST00000215793 RBKSQ9H477 322 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 METTL1Q9UBP6 276 aaKnown RBP11.68□□□□□ -0.54
SF3A1-201ENST00000215793 M0R3E3 92 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 PTGDSP41222 190 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 PRSS53Q2L4Q9 553 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 FHL5Q5TD97 284 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 ZNF826PQ6ZT77 177 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 CISD1Q9NZ45 108 aaKnown RBP11.68□□□□□ -0.54
SF3A1-201ENST00000215793 HILPDAQ9Y5L2 63 aa11.68□□□□□ -0.54
SF3A1-201ENST00000215793 PIN1P1O15428 100 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 CFDP00746 253 aaPredicted RBP11.67□□□□□ -0.54
SF3A1-201ENST00000215793 FCARP24071 287 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 SLC35B1P78383 322 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 IGLV3-21P80748 117 aaPredicted RBP11.67□□□□□ -0.54
SF3A1-201ENST00000215793 TEX29Q8N6K0 151 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 OR10J6PQ8NGY7 276 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 ZFC3H1O60293 1989 aaKnown RBP11.67□□□□□ -0.54
SF3A1-201ENST00000215793 CRXO43186 299 aaPredicted RBP11.67□□□□□ -0.54
SF3A1-201ENST00000215793 HLA-DQA1P01909 254 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 GPR146Q96CH1 333 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 METTL26Q96S19 204 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 WFDC6Q9BQY6 131 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 JPT1Q9UK76 154 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 KIAA1217Q5T5P2 1943 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 ZNF658BQ4V348 819 aaPredicted RBP11.67□□□□□ -0.54
SF3A1-201ENST00000215793 Q96M66 194 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 IDI2-AS1Q9NZ38 188 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 PILRBQ9UKJ0 227 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 MARF1Q9Y4F3 1742 aaKnown RBP11.67□□□□□ -0.54
SF3A1-201ENST00000215793 SCARF2Q96GP6 870 aaPredicted RBP11.67□□□□□ -0.54
SF3A1-201ENST00000215793 TBX15Q96SF7 602 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 HSPB7Q9UBY9 170 aa11.67□□□□□ -0.54
SF3A1-201ENST00000215793 TRBV23-1A0A0A0MS06 115 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 OR4C12Q96R67 309 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 KCNAB3O43448 404 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 SS18L1O75177 396 aaPredicted RBP11.66□□□□□ -0.54
SF3A1-201ENST00000215793 HKR1P10072 659 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 GCSHP23434 173 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 FAM209AQ5JX71 171 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 ADAMTS7Q9UKP4 1686 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 TRAV30A0A087WSZ9 112 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 IGHV3-72A0A0B4J1Y9 119 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 C1QL1O75973 258 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 RPLP1P05386 114 aaKnown RBP11.66□□□□□ -0.54
SF3A1-201ENST00000215793 RPS11P62280 158 aaKnown RBP eCLIP11.66□□□□□ -0.54
SF3A1-201ENST00000215793 GUCA2BQ16661 112 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 SNAI3Q3KNW1 292 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 HCP5Q6MZN7 132 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 C16orf92Q96LL3 132 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 IGKV1D-42A0A075B6H8 117 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 LOC390937A0A1W2PQ73 354 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 PGPA6NDG6 321 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 COX6A1P12074 109 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 RND2P52198 227 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 TWIST1Q15672 202 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 LINC01590Q5TEZ4 76 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 FAM181AQ8N9Y4 354 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 CHRNA10Q9GZZ6 450 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 G6PC2Q9NQR9 355 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 IL36RNQ9UBH0 155 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 TMEM56-RWDD3S4R434 201 aa11.66□□□□□ -0.54
SF3A1-201ENST00000215793 F12P00748 615 aaPredicted RBP11.65□□□□□ -0.54
SF3A1-201ENST00000215793 UCP3P55916 312 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 ZNF841Q6ZN19 808 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 SELENOHQ8IZQ5 122 aaKnown RBP11.65□□□□□ -0.54
SF3A1-201ENST00000215793 KLF14Q8TD94 323 aaPredicted RBP11.65□□□□□ -0.54
SF3A1-201ENST00000215793 TMEM45BQ96B21 275 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 TP53RKQ96S44 253 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 MIEN1Q9BRT3 115 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 SFXN3Q9BWM7 321 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 ZNF638Q14966 1978 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms