RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TAF10Q12962 218 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM155Q4W5P6 130 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 LCN9Q8WX39 176 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PRDM6Q9NQX0 595 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 RCL1Q9Y2P8 373 aaKnown RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CDC42BPAQ5VT25 1732 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PCSK5Q92824 1860 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TRPM3Q9HCF6 1732 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF840PA6NDX5 716 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 NPIPB6E9PJ23 425 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 IL18BPO95998 194 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 INAFM2P0DMQ5 153 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PSMB1P20618 241 aaKnown RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 VDAC2P45880 294 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 RHOGP84095 191 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 C8orf46Q8TAG6 207 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 GPR84Q9NQS5 396 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 IFITM10A6NMD0 228 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CHEK1O14757 476 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TNFRSF10CO14798 259 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CRYBB3P26998 211 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF93P35789 620 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FAM162BQ5T6X4 162 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 LEG1Q6P5S2 330 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 KCTD18Q6PI47 426 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 OR11H7Q8NGC8 314 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 OR2T10Q8NGZ9 312 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 SHISA4Q96DD7 197 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 RNF39Q9H2S5 420 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TUBA4BQ9H853 241 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 SLC39A9Q9NUM3 307 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PCF11O94913 1555 aaKnown RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 STAB2Q8WWQ8 2551 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 USP17L23D6RBM5 183 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 C1RP00736 705 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 HERVK_113P63121 156 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 COL10A1Q03692 680 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 SLC35E4Q6ICL7 350 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 OR4C11Q6IEV9 310 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CTU1Q7Z7A3 348 aaKnown RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 GLIS3Q8NEA6 775 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 THEM6Q8WUY1 208 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 SLC25A28Q96A46 364 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TRAV8-4A0A0B4J246 113 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 NEURL1BA8MQ27 555 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 NPIPB7O75200 414 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 ALOX5APP20292 161 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TAS2R19P59542 299 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 DOK7Q18PE1 504 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 SAMD5Q5TGI4 173 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TXNRD3NBQ6F5E7 133 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PRO0628Q9UI54 55 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 UBIAD1Q9Y5Z9 338 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CEBPZOSA8MTT3 80 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 SLC25A4P12235 298 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 GAGE13Q4V321 117 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 UMODL1-AS1Q8N2C9 162 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM54Q969K7 222 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PAXXQ9BUH6 204 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 POLR1DQ9Y2S0 133 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 SNED1Q8TER0 1413 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TRAV38-1A0A0B4J264 116 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ZFP92A6NM28 416 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 MLNRO43193 412 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 OR1C1Q15619 314 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 LCN12Q6JVE5 192 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 STAC2Q6ZMT1 411 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 SYT8Q8NBV8 401 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 C8orf44Q96CB5 159 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 OR8B2Q96RD0 313 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 EMC6Q9BV81 110 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PLEKHA3Q9HB20 300 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 MANBALQ9NQG1 85 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF319Q9P2F9 582 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TOP2BQ02880 1626 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 CDK13Q14004 1512 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 LMTK2Q8IWU2 1503 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 A0A096LPK6 155 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 RBM3P98179 157 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 LAMTOR4Q0VGL1 99 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 FZD2Q14332 565 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 DUSP15Q9H1R2 295 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PRRC2CQ9Y520 2896 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF724A8MTY0 619 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 APOC4-APOC2K7ER74 178 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF593O00488 134 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PPIHO43447 177 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 MARCKSL1P49006 195 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM241Q24JQ0 296 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TRMT12Q53H54 448 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 IL22RA1Q8N6P7 574 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 SFT2D2O95562 160 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 OR5AL1P0C617 328 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF134P52741 427 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 WDR25Q64LD2 544 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PRSS45Q7RTY3 260 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 C16orf82Q7Z2V1 217 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 DUSP13Q9UII6 198 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 HCRTO43612 131 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TWIST1Q15672 202 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms