RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CIARTQ8N365 385 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 KLKB1P03952 638 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 MC5RP33032 325 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 RIPPLY3P57055 190 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 CLDN2P57739 230 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SMAD4Q13485 552 aaKnown RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 OR52E5Q8NH55 327 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SNRNP40Q96DI7 357 aaKnown RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 OR8B2Q96RD0 313 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 CDK5RAP2Q96SN8 1893 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 NGFP01138 241 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 C8orf88P0DMB2 117 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 NANOS3P60323 173 aaKnown RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 S100A7L2Q5SY68 101 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SCNM1Q9BWG6 230 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 AHDC1Q5TGY3 1603 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 ASAH2BP0C7U1 165 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 ACP1P24666 158 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 CEACAM16Q2WEN9 425 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 ANKRD39Q53RE8 183 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 OR8B12Q8NGG6 310 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SPACA9Q96E40 222 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 CRYBB3P26998 211 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 CCL20P78556 96 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 ACSM6Q6P461 480 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SPRED2Q7Z698 418 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 RDH5Q92781 318 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 KISS1RQ969F8 398 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SEPSECSQ9HD40 501 aaKnown RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 PRRT4C9JH25 899 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 TSPAN13O95857 204 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 RPL23P62829 140 aaKnown RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 NUDT8Q8WV74 236 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 CXCL16Q9H2A7 254 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 TRBV20-1A0A075B6N2 111 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 GAGE12BA1L429 117 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 TDGF1P13385 188 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 WIPI1Q5MNZ9 446 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 FAM182BQ5T319 152 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SAMD5Q5TGI4 173 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 VSTM2LQ96N03 204 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 PAXXQ9BUH6 204 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 AICDAQ9GZX7 198 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF703Q9H7S9 590 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 KCNE3Q9Y6H6 103 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 DOT1LQ8TEK3 1739 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 KIR2DL5BA0A0G2JN68 375 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 KIR2DL5BA0A0G2JPC4 375 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 F8W1H4 67 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF865P0CJ78 1059 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF658BQ4V348 819 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 LINC01551Q86U37 167 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 KIR2DL5AQ8N109 375 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 APOBEC4Q8WW27 367 aaKnown RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 Q96M66 194 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 TSPAN2O60636 221 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 GDF1P27539 372 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 CAPZBP47756 277 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM238C9JI98 176 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 NRG2O14511 850 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 TNFSF14O43557 240 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 HMGA1P17096 107 aaKnown RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 DSCR4P56555 118 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SSBP2P81877 361 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 RELBQ01201 579 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SIGLEC14Q08ET2 396 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SVIPQ8NHG7 77 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 CYTL1Q9NRR1 136 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 J3QRE1 110 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 LHX2P50458 406 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF750Q32MQ0 723 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 METTL27Q8N6F8 245 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 SLC25A40Q8TBP6 338 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 FMC1Q96HJ9 113 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 OVOL2Q9BRP0 275 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 WNT16Q9UBV4 365 aa4.05□□□□□ -1.76
SCN1A-220ENST00000641603 AMMECR1Q9Y4X0 333 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 MRPS18BQ9Y676 258 aaKnown RBP4.05□□□□□ -1.76
SCN1A-220ENST00000641603 KBTBD11-OT1A0A1B0GTJ5 212 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 KIR2DL1P43626 348 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF793Q6ZN11 406 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 OR5P3Q8WZ94 311 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TIMP4Q99727 224 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 LHX9Q9NQ69 397 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TNFRSF19Q9NS68 423 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 PDE4DIPQ5VU43 2346 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 IGHV2OR16-5A0A0B4J2B6 119 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 LOC107984156A0A0G2JMH3 177 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM202A6NGA9 273 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 SIVA1O15304 175 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM50AO95807 157 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ZGLP1P0C6A0 271 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TMIGD3P0DMS9 266 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 PVRP15151 417 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 APOBEC3AP31941 199 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 RNPS1Q15287 305 aaKnown RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TEX43Q6ZNM6 134 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ARL17AQ8IVW1 177 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 A0A0U1RQS6 177 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 KLRC4-KLRK1H3BQV0 150 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms