RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 METTL27Q8N6F8 245 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 C5orf17Q8NAS9 161 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR10G8Q8NGN5 311 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR52N5Q8NH56 324 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM167BQ9NRX6 74 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 HSPB7Q9UBY9 170 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 WSB1Q9Y6I7 421 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 STRCP1A6NGW2 1772 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 STRCQ7RTU9 1775 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 A0A1W2PQM1 296 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CXorf65A6NEN9 183 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 DHRS7CA6NNS2 312 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 FUT3P21217 361 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 NPPCP23582 126 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CNTFRP26992 372 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 MAS1LP35410 378 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SLC25A11Q02978 314 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PRSS8Q16651 343 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 LINC01559Q495D7 138 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 MEIG1Q5JSS6 88 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR52B4Q8NGK2 314 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TEX101Q9BY14 249 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 VSIG4Q9Y279 399 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PHLDA3Q9Y5J5 127 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 DDX60LQ5H9U9 1706 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 FZD6O60353 706 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 GAPDHP04406 335 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 IL6RP08887 468 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ADRA2AP08913 450 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 HRH1P35367 487 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 GDF5P43026 501 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 UBE2L3P68036 154 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PSG9Q00887 426 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 RUNX1Q01196 453 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 RSPO4Q2I0M5 234 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PRICKLE4Q2TBC4 344 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF562Q6V9R5 426 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 WDFY1Q8IWB7 410 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 RDH5Q92781 318 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 HSPB9Q9BQS6 159 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 C19orf24Q9BVV8 132 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TMPRSS13Q9BYE2 586 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PLSCR3Q9NRY6 295 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SLC17A4Q9Y2C5 497 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR2W1Q9Y3N9 320 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV21A0A0B4J279 112 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CXorf51AA0A1B0GTR3 108 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PRR19A6NJB7 356 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 LMO7DNF2Z398 122 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CLDN34H7C241 214 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 GPR75O95800 540 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZGLP1P0C6A0 271 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF735P0CB33 412 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 IFITM2Q01629 132 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SRSF5Q13243 272 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM176BQ3YBM2 270 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CBLN2Q8IUK8 224 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ACY3Q96HD9 319 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 BEX4Q9NWD9 120 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 JKAMPQ9P055 326 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 DOT1LQ8TEK3 1739 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TCRBV7S3A2A0A539 114 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 LINC01553A4QN01 128 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TISP43B9A030 160 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TGFAP01135 160 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CCL3L1P16619 93 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ACHEP22303 614 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 VDAC2P45880 294 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM128Q5BJH2 165 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OSR1Q8TAX0 266 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SLC37A2Q8TED4 501 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 C1QTNF6Q9BXI9 259 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 MED20Q9H944 212 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR5AC2Q9NZP5 309 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TNRC6BQ9UPQ9 1833 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CGB1A6NKQ9 187 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 C1QTNF9BB2RNN3 333 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ERVH48-1M5A8F1 160 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 DUSP14O95147 198 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PAPLNO95428 1278 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 IL1RNP18510 177 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PI3P19957 117 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 IER3P46695 156 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF324BQ6AW86 544 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZDHHC22Q8N966 263 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR8D4Q8NGM9 314 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 NAA50Q9GZZ1 169 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 WRAP73Q9P2S5 460 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 C19orf53Q9UNZ5 99 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM56-RWDD3S4R434 201 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PLCH1Q4KWH8 1693 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM150BA6NC51 233 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 NDUFA4O00483 81 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CA11O75493 328 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 NDUFC2O95298 119 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF146Q15072 292 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TCEAL1Q15170 157 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PNPLA5Q7Z6Z6 429 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR51H1Q8NH63 302 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ACER1Q8TDN7 264 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms