RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 STK38LQ9Y2H1 464 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RBM7Q9Y580 266 aaKnown RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 PUS1Q9Y606 427 aaKnown RBP eCLIP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 KMT2CQ8NEZ4 4911 aaKnown RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RAB3GAP2Q9H2M9 1393 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 MYO15BQ96JP2 1530 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 DSCAMO60469 2012 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ZFYVE26Q68DK2 2539 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ALPK2Q86TB3 2170 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 CLUHO75153 1309 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 AQRO60306 1485 aaKnown RBP eCLIP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 GRIN2BQ13224 1484 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 LOC110117498A0A087WWA1 95 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 IGHV1-18A0A0C4DH31 117 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 IGKV1-9A0A0C4DH69 117 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 GRIFINA4D1Z8 144 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 TRAPPC13A5PLN9 417 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 MGAT4DA6NG13 374 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 IBA57-AS1B1ANH7 110 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR11H12B2RN74 326 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 BOLA2-SMG1P6H3BVE0 249 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 UBDO15205 165 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 FABP7O15540 132 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 NDUFB2O95178 105 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 BRI3O95415 125 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 SERPINA7P05543 415 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 FBP1P09467 338 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 CD7P09564 240 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ATF1P18846 271 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ALDH3A1P30838 453 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 UGT2B10P36537 528 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 PPP1CCP36873 323 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 IFNGR2P38484 337 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 HSPA9P38646 679 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 CCR2P41597 374 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ACTR1BP42025 376 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 AKR1C3P42330 323 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 HSPA13P48723 471 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 EVX1P49640 407 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 PSMB3P49720 205 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 HINT1P49773 126 aaPredicted RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 AKR1C2P52895 323 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ACTBP60709 375 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 SNAP25P60880 206 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ACTG1P63261 375 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 SLC35A2P78381 396 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 RUNX1Q01196 453 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 GLO1Q04760 184 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 SRSF6Q13247 344 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 CDK5R1Q15078 307 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 PAFAH1B3Q15102 231 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 PDK2Q15119 407 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 TRAM1Q15629 374 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 USF2Q15853 346 aaPredicted RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 DEFB115Q30KQ5 88 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 C18orf21Q32NC0 220 aaPredicted RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 SLC36A2Q495M3 483 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 TRMT12Q53H54 448 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 MESTQ5EB52 335 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR10J3Q5JRS4 329 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 HBMQ6B0K9 141 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 XKRXQ6PP77 449 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 DRAM2Q6UX65 266 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 C7orf65Q6ZTY9 151 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 PID1Q7Z2X4 250 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 LHFPL1Q86WI0 220 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 C1orf174Q8IYL3 243 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 Q8N6K4 173 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ZNF321PQ8N8H1 164 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 CDRT4Q8N9R6 151 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ZNF439Q8NDP4 499 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR8G5Q8NG78 346 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR8B12Q8NGG6 310 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR52K2Q8NGK3 314 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR5D18Q8NGL1 313 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR6N2Q8NGY6 317 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR11H2Q8NH07 326 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 OR5K1Q8NHB7 308 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 CASTOR1Q8WTX7 329 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 CDKL2Q92772 493 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 FGF13Q92913 245 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 LRRC39Q96DD0 335 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ABHD14BQ96IU4 210 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 PGLYRP3Q96LB9 341 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 FAM210AQ96ND0 272 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 TRNT1Q96Q11 434 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 HBEGFQ99075 208 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 MGLLQ99685 303 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 BCL7BQ9BQE9 202 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 ADAT1Q9BUB4 502 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 NKX6-2Q9C056 277 aaPredicted RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 IQCGQ9H095 443 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 GAL3ST2Q9H3Q3 398 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 GOLPH3Q9H4A6 298 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 CLSTN2Q9H4D0 955 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 C10orf95Q9H7T3 257 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 METTL8Q9H825 291 aaKnown RBP-0.08□□□□□ -2.42
VPS35-212ENST00000640313 LZTFL1Q9NQ48 299 aa-0.08□□□□□ -2.42
VPS35-212ENST00000640313 IFT46Q9NQC8 304 aa-0.08□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 292.6 ms