RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 A0A1W2PN81 502 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 C5orf49A4QMS7 147 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 SLC22A20A6NK97 555 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF729A6NN14 1252 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 J3QT63 122 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 PGLYRP1O75594 196 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 CLDN14O95500 239 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 CLDN1O95832 211 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 SPTBP11277 2137 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 COX5AP20674 150 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 CHRNA7P36544 502 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 FHITP49789 147 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 MEOX1P50221 254 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 IDH3GP51553 393 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TAS2R60P59551 318 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TGFBR3Q03167 851 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 ICAM4Q14773 271 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 NCMAPQ5T1S8 102 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 LCN15Q6UWW0 184 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 C6orf15Q6UXA7 325 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 NUFIP2Q7Z417 695 aaKnown RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 OR10D4PQ8NGN7 298 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 CLDND2Q8NHS1 167 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 FAM216AQ8WUB2 273 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 IL1F10Q8WWZ1 152 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM147Q9BVK8 224 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 GGACTQ9BVM4 153 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 CCL28Q9NRJ3 127 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 CACNG5Q9UF02 275 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 OR14J1Q9UGF5 321 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 RNF24Q9Y225 148 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 HS3ST3B1Q9Y662 390 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 NCOA6Q14686 2063 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 A0A1W2PQM1 296 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 OR5H1A6NKK0 313 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM210A6NLX4 147 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 SH2D1BO14796 132 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 SLC25A17O43808 307 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TUSC2O75896 110 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TUBG1P23258 451 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 ASCL1P50553 236 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 FOXL2P58012 376 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 RAB4BP61018 213 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 PKIAP61925 76 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 SLC38A11Q08AI6 406 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 ADIRFQ15847 76 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM241Q24JQ0 296 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TBC1D28Q2M2D7 210 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 LBHQ53QV2 105 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 NMSQ5H8A3 153 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 OR2B11Q5JQS5 317 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 CXorf66Q5JRM2 361 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 BRICD5Q6PL45 260 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 C12orf54Q6X4T0 127 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 CPEB3Q8NE35 698 aaKnown RBP3.4□□□□□ -1.87
SCN1A-214ENST00000637038 OR10A7Q8NGE5 316 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 ANAPC16Q96DE5 110 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 TAAR6Q96RI8 345 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 RARRES2Q99969 163 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 HIPK2Q9H2X6 1198 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 OR51I2Q9H344 312 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 OCIAD1Q9NX40 245 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 DOK5Q9P104 306 aa3.4□□□□□ -1.87
SCN1A-214ENST00000637038 IGKV1-27A0A075B6S5 117 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SERTM2A0A1B0GWG4 89 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF716A6NP11 495 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SLC31A2O15432 143 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 NAPSAO96009 420 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 MT-CO2P00403 227 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 UBE2NP61088 152 aaKnown RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 IGFBP7Q16270 282 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 KRTAP27-1Q3LI81 207 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 WIPI1Q5MNZ9 446 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ETV3LQ6ZN32 361 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF818PQ6ZRF7 136 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SSX9Q7RTT3 188 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SLC24A4Q8NFF2 622 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 MBD3L1Q8WWY6 194 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 BSCL2Q96G97 398 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TUBG2Q9NRH3 451 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 IGKV1-12A0A0C4DH73 117 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 CTXND1A0A1B0GTU2 59 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 C5orf63A6NC05 138 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 E9PLN8 166 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM250H0YL14 139 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 H0YL77 283 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 LCE2BO14633 110 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 NXPH2O95156 264 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 IGKV1D-12P01611 117 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 WNT2P09544 360 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 IL2RGP31785 369 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 CCKARP32238 428 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 NPBWR2P48146 333 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SOX8P57073 446 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM267Q0VDI3 215 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TRAT1Q6PIZ9 186 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 OR10P1Q8NGE3 313 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 PPP1R35Q8TAP8 253 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 HPSE2Q8WWQ2 592 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 RDH5Q92781 318 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms