RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 EIF5AL1Q6IS14 154 aaKnown RBP13.06□□□□□ -0.32
CLN3-251ENST00000636853 TMEM108Q6UXF1 575 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 Q6ZRM9 215 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 CBLN2Q8IUK8 224 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 ZNF645Q8N7E2 425 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 UBAC2Q8NBM4 344 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 ZNRF1Q8ND25 227 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 NINJ1Q92982 152 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 C5orf30Q96GV9 206 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 LURAP1Q96LR2 239 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 EGLN1Q9GZT9 426 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 PLEKHF2Q9H8W4 249 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 LIN7CQ9NUP9 197 aaKnown RBP13.06□□□□□ -0.32
CLN3-251ENST00000636853 UQCC1Q9NVA1 299 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 DPRXA6NFQ7 191 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 DEFB108AA8MXU0 73 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 TMEM50AO95807 157 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 LHBP01229 141 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 THBDP07204 575 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 OMGP23515 440 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 CD80P33681 288 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 VAMP2P63027 116 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 TNFAIP6P98066 277 aaPredicted RBP13.06□□□□□ -0.32
CLN3-251ENST00000636853 JKAMPQ9P055 326 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 ATXN7O15265 892 aaPredicted RBP13.05□□□□□ -0.32
CLN3-251ENST00000636853 CHST1O43916 411 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 DSCAMO60469 2012 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 MED6O75586 246 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 IGKV1-5P01602 117 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 CRYBA1P05813 215 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 SPP1P10451 314 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 AKR1C2P52895 323 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 AKR1C1Q04828 323 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 OR2B11Q5JQS5 317 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 GCM1Q9NP62 436 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 ADGRG4Q8IZF6 3080 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 C15orf65H3BRN8 121 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 PITX3O75364 302 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 LPAR6P43657 344 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 SWI5Q1ZZU3 235 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 FAM90A1Q86YD7 464 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 ABHD14BQ96IU4 210 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 SNX22Q96L94 193 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 HRH4Q9H3N8 390 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 CACNG5Q9UF02 275 aa13.05□□□□□ -0.32
CLN3-251ENST00000636853 BORCS7-ASMTA0A0B4J1R7 106 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 A0A1B0GU03 582 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 ODAMA1E959 279 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 WRBO00258 174 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 CYB5R3P00387 301 aaPredicted RBP13.04□□□□□ -0.32
CLN3-251ENST00000636853 SELLP14151 372 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 PTAFRP25105 342 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 SULT1A2P50226 295 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 RPL30P62888 115 aaKnown RBP13.04□□□□□ -0.32
CLN3-251ENST00000636853 BSPH1Q075Z2 132 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 CLINT1Q14677 625 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 BTNL3Q6UXE8 466 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 TGIF2LYQ8IUE0 185 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 TMEM252Q8N6L7 170 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 LINC00469Q8N7U9 141 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 NUP37Q8NFH4 326 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 PLPPR2Q96GM1 343 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 SMIM8Q96KF7 97 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 ARV1Q9H2C2 271 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 LYRM2Q9NU23 88 aaPredicted RBP13.04□□□□□ -0.32
CLN3-251ENST00000636853 RNF115Q9Y4L5 304 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 TLN1Q9Y490 2541 aaKnown RBP13.04□□□□□ -0.32
CLN3-251ENST00000636853 RAMP3O60896 148 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 EDDM3BP56851 147 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 RAB5BP61020 215 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 ODF3L1Q8IXM7 274 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 KDF1Q8NAX2 398 aaPredicted RBP13.04□□□□□ -0.32
CLN3-251ENST00000636853 RXFP4Q8TDU9 374 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 LSM10Q969L4 123 aaKnown RBP13.04□□□□□ -0.32
CLN3-251ENST00000636853 SH3BGRL3Q9H299 93 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 IL19Q9UHD0 177 aa13.04□□□□□ -0.32
CLN3-251ENST00000636853 USF3Q68DE3 2245 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 MGST3O14880 152 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 ST8SIA5O15466 376 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 SPINT2O43291 252 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 CST7O76096 145 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 GATA4P43694 442 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 ID4P47928 161 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 NPBWR1P48145 328 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 PAX9P55771 341 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 SRSF3P84103 164 aaKnown RBP13.03□□□□□ -0.32
CLN3-251ENST00000636853 PAX5Q02548 391 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 RBPJQ06330 500 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 RNF212Q495C1 297 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 DUX4L9Q6RFH8 374 aaPredicted RBP13.03□□□□□ -0.32
CLN3-251ENST00000636853 C15orf54Q8N8G6 183 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 HSD17B11Q8NBQ5 300 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 DEFB108BQ8NET1 73 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 RND1Q92730 232 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 ZNF251Q9BRH9 671 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 TCEAL7Q9BRU2 100 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 TOLLIPQ9H0E2 274 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 RNF7Q9UBF6 113 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 IGF2RP11717 2491 aa13.03□□□□□ -0.32
CLN3-251ENST00000636853 RNF212BA8MTL3 300 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms