RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GAL3ST2Q9H3Q3 398 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 FAM25EA8MYX2 175 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 F5H0A9 414 aaPredicted RBP16.5■□□□□ 0.23
CLN3-250ENST00000636839 ZFP36P26651 326 aaKnown RBP16.5■□□□□ 0.23
CLN3-250ENST00000636839 HEPN1Q6WQI6 88 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 CCDC71LQ8N9Z2 235 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 MSI2Q96DH6 328 aaKnown RBP16.5■□□□□ 0.23
CLN3-250ENST00000636839 GALNT14Q96FL9 552 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 IFI27L2Q9H2X8 130 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 SDHAF2Q9NX18 166 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 SVEP1Q4LDE5 3571 aa16.5■□□□□ 0.23
CLN3-250ENST00000636839 HOXB5P09067 269 aa16.49■□□□□ 0.23
CLN3-250ENST00000636839 ANXA3P12429 323 aa16.49■□□□□ 0.23
CLN3-250ENST00000636839 RPL39P5Q59GN2 51 aa16.49■□□□□ 0.23
CLN3-250ENST00000636839 FAM219AQ8IW50 185 aa16.49■□□□□ 0.23
CLN3-250ENST00000636839 ZNF645Q8N7E2 425 aa16.49■□□□□ 0.23
CLN3-250ENST00000636839 SUCNR1Q9BXA5 334 aa16.49■□□□□ 0.23
CLN3-250ENST00000636839 KCNIP3Q9Y2W7 256 aa16.49■□□□□ 0.23
CLN3-250ENST00000636839 PPIAL4CA0A0B4J2A2 164 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 PPIAL4GP0DN37 164 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 ZNF16P17020 682 aaPredicted RBP16.48■□□□□ 0.23
CLN3-250ENST00000636839 EIF2B2P49770 351 aaKnown RBP16.48■□□□□ 0.23
CLN3-250ENST00000636839 RPL30P62888 115 aaKnown RBP16.48■□□□□ 0.23
CLN3-250ENST00000636839 TCTE3Q8IZS6 198 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 ZNF439Q8NDP4 499 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 COQ8AQ8NI60 647 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 MARVELD3Q96A59 401 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 SSBP3Q9BWW4 388 aaPredicted RBP16.48■□□□□ 0.23
CLN3-250ENST00000636839 TRBV23-1A0A0A0MS06 115 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 C13orf42A0A1B0GVH6 325 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 G3V3Q6 166 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 F2RP25116 425 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 PDLIM4P50479 330 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 EIF4EBP1Q13541 118 aaPredicted RBP16.48■□□□□ 0.23
CLN3-250ENST00000636839 Q3ZCU0 254 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 LYZL2Q7Z4W2 148 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 OR5M8Q8NGP6 311 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 CLDND2Q8NHS1 167 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 ABHD14AQ9BUJ0 271 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 LPAR3Q9UBY5 353 aa16.48■□□□□ 0.23
CLN3-250ENST00000636839 OR2A4O95047 310 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 IGHV2-5P01817 119 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 LMO4P61968 165 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 OR2B11Q5JQS5 317 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 EDARADDQ8WWZ3 215 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 FAM168AQ92567 244 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 PPP1R14BQ96C90 147 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 AKR1E2Q96JD6 320 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 OR2A7Q96R45 310 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 CSMD1Q96PZ7 3565 aa16.47■□□□□ 0.23
CLN3-250ENST00000636839 GPR12P47775 334 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 LIAT1Q6ZQX7 453 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 ODF3L1Q8IXM7 274 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 OR2T35Q8NGX2 323 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 OR10C1Q96KK4 312 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 TMEM222Q9H0R3 208 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 IGHV4-30-2A0A087WSY4 118 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 KIAA1324LA8MWY0 1029 aaPredicted RBP16.46■□□□□ 0.23
CLN3-250ENST00000636839 RGS11O94810 467 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 IGHV1-8P0DP01 117 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 BRWD1-AS2P59051 145 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 ESCO2Q56NI9 601 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 LY6G5BQ8NDX9 201 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 OR11H4Q8NGC9 324 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 OR52M1Q8NGK5 317 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 C10orf105Q8TEF2 133 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 METTL8Q9H825 291 aaKnown RBP16.46■□□□□ 0.23
CLN3-250ENST00000636839 RAB9BQ9NP90 201 aa16.46■□□□□ 0.23
CLN3-250ENST00000636839 LOC105371242A0A075B767 164 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 A0A0B4J2A0 478 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 C5orf51A6NDU8 294 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 LINC00473A8K010 186 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 C17orf98A8MV24 154 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 GPR37O15354 613 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 LCN2P80188 198 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 ZFP69Q49AA0 526 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 LYG1Q8N1E2 194 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 C8orf46Q8TAG6 207 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 ONECUT1Q9UBC0 465 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 SHPKQ9UHJ6 478 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 APCP25054 2843 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 IGHV4-61A0A0C4DH41 118 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 RAMP3O60896 148 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 HLA-GP17693 338 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 ARF6P62330 175 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 TMEM268Q5VZI3 342 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 C18orf12Q96KH6 178 aa16.45■□□□□ 0.22
CLN3-250ENST00000636839 SAA2-SAA4A0A096LPE2 208 aa16.44■□□□□ 0.22
CLN3-250ENST00000636839 GIPP09681 153 aaPredicted RBP16.44■□□□□ 0.22
CLN3-250ENST00000636839 SAA2P0DJI9 122 aaPredicted RBP16.44■□□□□ 0.22
CLN3-250ENST00000636839 ZNF585BQ52M93 769 aa16.44■□□□□ 0.22
CLN3-250ENST00000636839 GGNBP1Q5YKI7 109 aa16.44■□□□□ 0.22
CLN3-250ENST00000636839 SLC35G3Q8N808 338 aa16.44■□□□□ 0.22
CLN3-250ENST00000636839 MMP26Q9NRE1 261 aa16.44■□□□□ 0.22
CLN3-250ENST00000636839 H0Y980 276 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 UCP1P25874 307 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 SLC25A48Q6ZT89 311 aaKnown RBP16.43■□□□□ 0.22
CLN3-250ENST00000636839 SELENOHQ8IZQ5 122 aaKnown RBP16.43■□□□□ 0.22
CLN3-250ENST00000636839 Q8N7P7 452 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 OR10A7Q8NGE5 316 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms