RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ANGPTL6Q8NI99 470 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 FAM45AQ8TCE6 357 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 LGALS14Q8TCE9 139 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 TRNT1Q96Q11 434 aaKnown RBP0.23□□□□□ -2.37
SCN1A-208ENST00000625916 MYCBPQ99417 103 aaPredicted RBP0.23□□□□□ -2.37
SCN1A-208ENST00000625916 CHST5Q9GZS9 411 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 RMND1Q9NWS8 449 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 TMEM216Q9P0N5 145 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 C22orf24Q9Y442 160 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 DLG5Q8TDM6 1919 aa0.23□□□□□ -2.37
SCN1A-208ENST00000625916 RAB3GAP2Q9H2M9 1393 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 MDFIC2A0A1B0GVS7 189 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 A0A1W2PQD3 144 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 SLC17A3O00476 420 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 CDIPTO14735 213 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 UBE2L6O14933 153 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 POLR3GO15318 223 aaPredicted RBP0.22□□□□□ -2.37
SCN1A-208ENST00000625916 FABP7O15540 132 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 CRXO43186 299 aaPredicted RBP0.22□□□□□ -2.37
SCN1A-208ENST00000625916 SHOX2O60902 331 aaPredicted RBP0.22□□□□□ -2.37
SCN1A-208ENST00000625916 IGHV1-69P01742 117 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 CRYGCP07315 174 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 PSMB3P49720 205 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 TAS2R45P59539 299 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 FGF12P61328 243 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 VSNL1P62760 191 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 CD164Q04900 197 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 SLC36A2Q495M3 483 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 TRMT12Q53H54 448 aaKnown RBP0.22□□□□□ -2.37
SCN1A-208ENST00000625916 CENPWQ5EE01 88 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 TMEM31Q5JXX7 168 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 OR10K2Q6IF99 312 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 GID4Q8IVV7 300 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 CNEP1R1Q8N9A8 125 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 OR5K1Q8NHB7 308 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 CYGBQ8WWM9 190 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 IFT81Q8WYA0 676 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 MRAP2Q96G30 205 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 ADAT1Q9BUB4 502 aaKnown RBP0.22□□□□□ -2.37
SCN1A-208ENST00000625916 OR51E2Q9H255 320 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 METTL8Q9H825 291 aaKnown RBP0.22□□□□□ -2.37
SCN1A-208ENST00000625916 STMN3Q9NZ72 180 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 HHLA2Q9UM44 414 aa0.22□□□□□ -2.37
SCN1A-208ENST00000625916 DNMT1P26358 1616 aaKnown RBP0.22□□□□□ -2.37
SCN1A-208ENST00000625916 IGHV3-64A0A075B6Q5 118 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 GSTTP1A0A1W2PQM5 241 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 PLA2G10O15496 165 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 STK16O75716 305 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 PSMG1O95456 288 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 CD7P09564 240 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 CCL3P10147 92 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 CDK2P24941 298 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 CD24P25063 80 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 OPRM1P35372 400 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 OR1E2P47887 323 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 ATP5J2P56134 94 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 AMTNQ6UX39 209 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 Q6ZT83 130 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 TMEM75Q8N9X5 138 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 CCDC112Q8NEF3 446 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 LFNGQ8NES3 379 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 ABHD14BQ96IU4 210 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 DOHHQ9BU89 302 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 MED28Q9H204 178 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 RPRD1BQ9NQG5 326 aaKnown RBP0.21□□□□□ -2.38
SCN1A-208ENST00000625916 LINC00527Q9UJ94 153 aa0.21□□□□□ -2.38
SCN1A-208ENST00000625916 ABCB11O95342 1321 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 GOLGA6L7A0A1B0GV03 622 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 EFCAB9A8MZ26 197 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 M0QYV0 167 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 BHLHE40O14503 412 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 SCN2BO60939 215 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 RPSAP08865 295 aaKnown RBP0.2□□□□□ -2.38
SCN1A-208ENST00000625916 CRYBB3P26998 211 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 AQP5P55064 265 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 FAM3AP98173 230 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 EMX1Q04741 257 aaPredicted RBP0.2□□□□□ -2.38
SCN1A-208ENST00000625916 VAMP3Q15836 100 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 TBC1D28Q2M2D7 210 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 LRRC75BQ2VPJ9 315 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 TTC33Q6PID6 262 aaPredicted RBP0.2□□□□□ -2.38
SCN1A-208ENST00000625916 DRAM2Q6UX65 266 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 MTERF4Q7Z6M4 381 aaKnown RBP0.2□□□□□ -2.38
SCN1A-208ENST00000625916 KTN1-AS1Q86SY8 53 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 SLC13A5Q86YT5 568 aaPredicted RBP0.2□□□□□ -2.38
SCN1A-208ENST00000625916 CATSPER2Q96P56 530 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 VCX3BQ9H321 246 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 NCOR1P1Q9H4R4 102 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 IFT46Q9NQC8 304 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 GLS2Q9UI32 602 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 ROS1P08922 2347 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 KIF27Q86VH2 1401 aa0.2□□□□□ -2.38
SCN1A-208ENST00000625916 GRIN2BQ13224 1484 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 HMSDA8MTL9 139 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 TXNDC9O14530 226 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 PHYHO14832 338 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 CIAO1O76071 339 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 SERPINA7P05543 415 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 CRYBA1P05813 215 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 OR13C7P0DN81 318 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms