RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 CGB7P0DN87 165 aa13.6□□□□□ -0.23
LDB3-208ENST00000623007 GPR12P47775 334 aa13.6□□□□□ -0.23
LDB3-208ENST00000623007 DMRTC2Q8IXT2 367 aaPredicted RBP13.6□□□□□ -0.23
LDB3-208ENST00000623007 DMBX1Q8NFW5 382 aa13.6□□□□□ -0.23
LDB3-208ENST00000623007 FBXL17Q9UF56 701 aa13.6□□□□□ -0.23
LDB3-208ENST00000623007 LINC00312Q9Y6C7 94 aa13.6□□□□□ -0.23
LDB3-208ENST00000623007 FAM90A27PA6NNH2 459 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 FAM90A9PA6NNJ1 464 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 KRBOX1C9JBD0 128 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 TOR1AO14656 332 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 FGF16O43320 207 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 ZNF16P17020 682 aaPredicted RBP13.59□□□□□ -0.23
LDB3-208ENST00000623007 AGAP20933 346 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 PPP1CCP36873 323 aaKnown RBP13.59□□□□□ -0.23
LDB3-208ENST00000623007 RAB5CP51148 216 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 GPR146Q96CH1 333 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 ADTRPQ96IZ2 230 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 AGMATQ9BSE5 352 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 C11orf1Q9H5F2 150 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 TMEM106BQ9NUM4 274 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 SDHAF2Q9NX18 166 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 PRELID3BQ9Y3B1 194 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 ZFHX4Q86UP3 3567 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 SEC11BP0C7V7 166 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 BLOC1S1P78537 153 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 MIDNQ504T8 468 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 ZNF585BQ52M93 769 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 SPRNQ5BIV9 151 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 UQCC3Q6UW78 93 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 STX12Q86Y82 276 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 TCTEX1D2Q8WW35 142 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 ARV1Q9H2C2 271 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 GFOD1Q9NXC2 390 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 CISD1Q9NZ45 108 aaKnown RBP13.59□□□□□ -0.23
LDB3-208ENST00000623007 KAAG1Q9UBP8 84 aa13.59□□□□□ -0.23
LDB3-208ENST00000623007 PRR14LQ5THK1 2151 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 CELSR3Q9NYQ7 3312 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 MFSD2BA6NFX1 497 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 CLDN14O95500 239 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 LPAR6P43657 344 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 PPOXP50336 477 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 LOXL3P58215 753 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 ADORA2A-AS1P86434 159 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 AANATQ16613 207 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 LRRC10Q5BKY1 277 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 FGFRL1Q8N441 504 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 TPRX1Q8N7U7 411 aa13.58□□□□□ -0.24
LDB3-208ENST00000623007 RAB19A4D1S5 217 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 TEX46H3BTG2 121 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 RAB29O14966 203 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 DFFBO76075 338 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 CAV2P51636 162 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 POLR2GP62487 172 aaKnown RBP eCLIP13.57□□□□□ -0.24
LDB3-208ENST00000623007 EWSR1Q01844 656 aaKnown RBP eCLIP13.57□□□□□ -0.24
LDB3-208ENST00000623007 HFEQ30201 348 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 SPAG16Q8N0X2 631 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 IDI2-AS1Q9NZ38 188 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 SLC25A10Q9UBX3 287 aaPredicted RBP13.57□□□□□ -0.24
LDB3-208ENST00000623007 PSG11Q9UQ72 335 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 DYSFO75923 2080 aa13.57□□□□□ -0.24
LDB3-208ENST00000623007 I3L521 148 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 GPR37O15354 613 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 TMPRSS2O15393 492 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 NDUFB3O43676 98 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 SYNGR2O43760 224 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 SSSCA1O60232 199 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 HPRT1P00492 218 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 GYPAP02724 150 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 ZNF672Q499Z4 452 aaPredicted RBP13.56□□□□□ -0.24
LDB3-208ENST00000623007 RPL7L1Q6DKI1 246 aaKnown RBP13.56□□□□□ -0.24
LDB3-208ENST00000623007 TMEM252Q8N6L7 170 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 RFESDQ8TAC1 157 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 UBALD1Q8TB05 177 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 CIB3Q96Q77 187 aaPredicted RBP13.56□□□□□ -0.24
LDB3-208ENST00000623007 CCL13Q99616 98 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 GINS3Q9BRX5 216 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 TMEM204Q9BSN7 226 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 ABHD14AQ9BUJ0 271 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 PARP12Q9H0J9 701 aaKnown RBP13.56□□□□□ -0.24
LDB3-208ENST00000623007 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.56□□□□□ -0.24
LDB3-208ENST00000623007 CACNG5Q9UF02 275 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 SPTBN2O15020 2390 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 IGHV1-69-2A0A0G2JMI3 117 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 KCNAB3O43448 404 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 IGKV1-39P01597 117 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 IGKV1D-39P04432 117 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 SULT1A2P50226 295 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 SWI5Q1ZZU3 235 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 C17orf58Q2M2W7 97 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 CXorf66Q5JRM2 361 aaPredicted RBP13.56□□□□□ -0.24
LDB3-208ENST00000623007 MUC15Q8N387 334 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 SMIM8Q96KF7 97 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 AIFM2Q9BRQ8 373 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 RNF150Q9ULK6 438 aa13.56□□□□□ -0.24
LDB3-208ENST00000623007 CHST1O43916 411 aa13.55□□□□□ -0.24
LDB3-208ENST00000623007 IGKV1-5P01602 117 aa13.55□□□□□ -0.24
LDB3-208ENST00000623007 FGF2P09038 288 aa13.55□□□□□ -0.24
LDB3-208ENST00000623007 DAOP14920 347 aa13.55□□□□□ -0.24
LDB3-208ENST00000623007 TAGLNQ01995 201 aaKnown RBP13.55□□□□□ -0.24
LDB3-208ENST00000623007 IL34Q6ZMJ4 242 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms