RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 WNT5BQ9H1J7 359 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 IGKV3D-15A0A087WSY6 115 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 CORTO00230 105 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 SLC25A17O43808 307 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 PAGE4O60829 102 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 CDS2O95674 445 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 IGKV3-15P01624 115 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 SUCLG1P53597 346 aaKnown RBP9.79□□□□□ -0.84
CLIP1-219ENST00000620786 SLC35E4Q6ICL7 350 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 SLC35E3Q7Z769 313 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 OR10G8Q8NGN5 311 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 LHFPL6Q9Y693 200 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 COX5BP10606 129 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 SMAGPQ0VAQ4 97 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 FAM216AQ8WUB2 273 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 PARP14Q460N5 1801 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 F5P12259 2224 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 LIMS1P48059 325 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 LGALSLQ3ZCW2 172 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-219ENST00000620786 TOMM20LQ6UXN7 152 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 STPG3Q8N7X2 389 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 IGLV1-36A0A0B4J1U3 117 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 KCNAB3O43448 404 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 PDE6DO43924 150 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 CSRP1P21291 193 aaKnown RBP9.78□□□□□ -0.84
CLIP1-219ENST00000620786 TIMM23BQ5SRD1 257 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 Q6ZN92 141 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 OR9G1Q8NH87 305 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 SPAG17Q6Q759 2223 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 M0R2Z0 102 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 THY1P04216 161 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 MFAP4P55083 255 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 BSPH1Q075Z2 132 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 OR4B1Q8NGF8 309 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 SSBP3Q9BWW4 388 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-219ENST00000620786 NXF2Q9GZY0 626 aaKnown RBP9.78□□□□□ -0.84
CLIP1-219ENST00000620786 FSTP19883 344 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 HNRNPA3P51991 378 aaKnown RBP9.78□□□□□ -0.84
CLIP1-219ENST00000620786 RIPPLY2Q5TAB7 128 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 ANAPC16Q96DE5 110 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 OR10J1P30954 320 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 LY6DQ14210 128 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 BSXQ3C1V8 233 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 UNQ9370/PRO34162Q6UXP9 181 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 LDLRAD3Q86YD5 345 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 PTX4Q96A99 478 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 PHYHIPLQ96FC7 376 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 GPX7Q96SL4 187 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-219ENST00000620786 SNRPCP09234 159 aaKnown RBP9.78□□□□□ -0.84
CLIP1-219ENST00000620786 PPOXP50336 477 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 CLDN18P56856 261 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 IGLV3-21P80748 117 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-219ENST00000620786 TWIST1Q15672 202 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 VAMP3Q15836 100 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 TMEM91Q6ZNR0 172 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 DLL3Q9NYJ7 618 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 TMEM56-RWDD3S4R434 201 aa9.78□□□□□ -0.84
CLIP1-219ENST00000620786 LMX1BO60663 402 aa9.77□□□□□ -0.84
CLIP1-219ENST00000620786 MELTFP08582 738 aa9.77□□□□□ -0.84
CLIP1-219ENST00000620786 IFI6P09912 130 aa9.77□□□□□ -0.84
CLIP1-219ENST00000620786 RNF151Q2KHN1 245 aa9.77□□□□□ -0.84
CLIP1-219ENST00000620786 NEU4Q8WWR8 484 aaPredicted RBP9.77□□□□□ -0.84
CLIP1-219ENST00000620786 AMELYQ99218 206 aa9.77□□□□□ -0.84
CLIP1-219ENST00000620786 VAX2Q9UIW0 290 aa9.77□□□□□ -0.84
CLIP1-219ENST00000620786 SBF2Q86WG5 1849 aa9.77□□□□□ -0.84
CLIP1-219ENST00000620786 XIRP1Q702N8 1843 aaKnown RBP9.77□□□□□ -0.85
CLIP1-219ENST00000620786 ZP3P21754 424 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 CLLU1Q5K131 121 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 EEF1AKMT3Q96AZ1 226 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 OR10C1Q96KK4 312 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 V9GYH0 126 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 ZNF729A6NN14 1252 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-219ENST00000620786 HMSDA8MTL9 139 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 H0Y980 276 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 CRISP2P16562 243 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 MRPL54Q6P161 138 aaKnown RBP9.77□□□□□ -0.85
CLIP1-219ENST00000620786 MARVELD1Q9BSK0 173 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 TMEM204Q9BSN7 226 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 TUBA4BQ9H853 241 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 NPVFQ9HCQ7 196 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 DSPPQ9NZW4 1301 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 RGS13O14921 159 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 REG1AP05451 166 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 ZNF841Q6ZN19 808 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 TMEM106BQ9NUM4 274 aa9.77□□□□□ -0.85
CLIP1-219ENST00000620786 CHCHD2Q9Y6H1 151 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-219ENST00000620786 PITX3O75364 302 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 RD3LP0DJH9 198 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 AMMECR1LQ6DCA0 310 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 OR2T10Q8NGZ9 312 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 DPH3Q96FX2 82 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 MIXL1Q9H2W2 232 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 KIF13BQ9NQT8 1826 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 TMEM189A5PLL7 270 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 FAM90A10PA6NDY2 464 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 FAM90A18PA6NE21 464 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 FAM90A16PA6NEW6 464 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 FAM90A20PA6NIJ5 464 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 FAM90A8PA6NJQ4 464 aa9.76□□□□□ -0.85
CLIP1-219ENST00000620786 FAM90A7PA6NKC0 464 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms