RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CEACAM3P40198 252 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 RAB7AP51149 207 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 ACTBL2Q562R1 376 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 OR5H2Q8NGV7 314 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 TRIM63Q969Q1 353 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 MEGF9Q9H1U4 602 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 FAM96BQ9Y3D0 163 aa15.93■□□□□ 0.14
UPF3A-211ENST00000618700 ZNF736B4DX44 427 aaPredicted RBP15.92■□□□□ 0.14
UPF3A-211ENST00000618700 TBPP20226 339 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 NFYAP23511 347 aaPredicted RBP15.92■□□□□ 0.14
UPF3A-211ENST00000618700 PAX6P26367 422 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 IL3RAP26951 378 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 OR3A3P47888 321 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 RFX2P48378 723 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 ZNF45Q02386 682 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 DYRK1AQ13627 763 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 Q8N402 240 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 SIGLECL1Q8N7X8 197 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 TMEM229BQ8NBD8 167 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 EHFQ9NZC4 300 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 HILPDAQ9Y5L2 63 aa15.92■□□□□ 0.14
UPF3A-211ENST00000618700 SAA2-SAA4A0A096LPE2 208 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 OOSP1A8MZH6 123 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 PMP2P02689 132 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 CD74P04233 296 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 CD3DP04234 171 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 SAA2P0DJI9 122 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-211ENST00000618700 DIAPH2-AS1Q14236 149 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 SSX2Q16385 188 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 KRTAP21-3Q3LHN1 58 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 VAX1Q5SQQ9 334 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 ZNF660Q6AZW8 331 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-211ENST00000618700 Q6YL49 198 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 LYG1Q8N1E2 194 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 GDPD1Q8N9F7 314 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 TOMM40LQ969M1 308 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 RPEQ96AT9 228 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 SDHCQ99643 169 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-211ENST00000618700 THAP7Q9BT49 309 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-211ENST00000618700 OR2W1Q9Y3N9 320 aa15.91■□□□□ 0.14
UPF3A-211ENST00000618700 A0A1W2PPI3 338 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 VGLL3A8MV65 326 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 HSD17B6O14756 317 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 CSF1P09603 554 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 FCGR2CP31995 323 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 TAS2R19P59542 299 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 ZNF816Q0VGE8 651 aaPredicted RBP15.9■□□□□ 0.14
UPF3A-211ENST00000618700 AANATQ16613 207 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 CCDC144NLQ6NUI1 221 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 FAM71F2Q6NXP2 309 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 ZNF833PQ6ZTB9 187 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 GIMAP1Q8WWP7 306 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 ZNF251Q9BRH9 671 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 GHITMQ9H3K2 345 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 TAS2R8Q9NYW2 309 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 PIPOXQ9P0Z9 390 aa15.9■□□□□ 0.14
UPF3A-211ENST00000618700 ANKRD20A5PA0PJZ0 165 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 M0QYG6 137 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 RAB29O14966 203 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 OR8U9P0C7N5 309 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 AADACP22760 399 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 RNASE10Q5GAN6 216 aaKnown RBP15.89■□□□□ 0.13
UPF3A-211ENST00000618700 DHRS11Q6UWP2 260 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 OR8U1Q8NH10 309 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 ZNF418Q8TF45 676 aaPredicted RBP15.89■□□□□ 0.13
UPF3A-211ENST00000618700 RTN4IP1Q8WWV3 396 aaPredicted RBP15.89■□□□□ 0.13
UPF3A-211ENST00000618700 ABHD14BQ96IU4 210 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 OR2D2Q9H210 308 aa15.89■□□□□ 0.13
UPF3A-211ENST00000618700 JMJD1CQ15652 2540 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 IGKV1D-13A0A0B4J2D9 117 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 PPYP01298 95 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 IGKV1-13P0DP09 117 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 REG1BP48304 166 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 DYNLT3P51808 116 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 LUMP51884 338 aaPredicted RBP15.88■□□□□ 0.13
UPF3A-211ENST00000618700 HILS1P60008 231 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 LRRC75BQ2VPJ9 315 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 STEAP1BQ6NZ63 245 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 OR8H3Q8N146 312 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.88■□□□□ 0.13
UPF3A-211ENST00000618700 OR4D10Q8NGI6 311 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 SSMEM1Q8WWF3 244 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 S100ZQ8WXG8 99 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 TINAGL1Q9GZM7 467 aaPredicted RBP15.88■□□□□ 0.13
UPF3A-211ENST00000618700 ESM1Q9NQ30 184 aa15.88■□□□□ 0.13
UPF3A-211ENST00000618700 A0A0A6YYJ9 748 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 TXNL1O43396 289 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 PROP1O75360 226 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 GAPDHP04406 335 aaKnown RBP15.87■□□□□ 0.13
UPF3A-211ENST00000618700 IER3P46695 156 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 GPR12P47775 334 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 KLF9Q13886 244 aaPredicted RBP15.87■□□□□ 0.13
UPF3A-211ENST00000618700 HABP2Q14520 560 aaPredicted RBP15.87■□□□□ 0.13
UPF3A-211ENST00000618700 BAK1Q16611 211 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 PLA1AQ53H76 456 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 RPL39P5Q59GN2 51 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 RBMS3Q6XE24 437 aaKnown RBP15.87■□□□□ 0.13
UPF3A-211ENST00000618700 TGIF2LXQ8IUE1 241 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 ARRDC1Q8N5I2 433 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 PIFOQ8TCI5 191 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms