RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 Q8N2B8 174 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 ZNF383Q8NA42 475 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 OR5B12Q96R08 314 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 ZNF696Q9H7X3 374 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 C12orf4Q9NQ89 552 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 GHRLQ9UBU3 117 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 RAB22AQ9UL26 194 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 A3GALT2U3KPV4 340 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 FAM90A10PA6NDY2 464 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 FAM90A7PA6NKC0 464 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 FAM90A23PA8MXZ1 464 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 WIPF1O43516 503 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 OR2F2O95006 317 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 TNFAIP8O95379 198 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 UBBP0CG47 229 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 MYOD1P15172 320 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 KCNJ3P48549 501 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 HLA-DRB3P79483 266 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 SSBP2P81877 361 aaPredicted RBP4.49□□□□□ -1.69
CPNE3-208ENST00000614678 SPCS2Q15005 226 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 TRAM1Q15629 374 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 FOXB2Q5VYV0 432 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 VKORC1L1Q8N0U8 176 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 OR13F1Q8NGS4 319 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 ALX4Q9H161 411 aaPredicted RBP4.49□□□□□ -1.69
CPNE3-208ENST00000614678 FBXL15Q9H469 300 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 SPACA1Q9HBV2 294 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 RHBDL2Q9NX52 303 aa4.49□□□□□ -1.69
CPNE3-208ENST00000614678 TRIM64CA6NLI5 447 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 TNFSF12O43508 249 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 SOX15O60248 233 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 DYNLT3P51808 116 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 BRWD1-AS2P59051 145 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 ACTBP60709 375 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 DEFA6Q01524 100 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 Q3ZCU0 254 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 KHDC1LQ5JSQ8 128 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 FAM71E2Q8N5Q1 922 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 SNAPC3Q92966 411 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 URM1Q9BTM9 101 aaKnown RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 YTHDF1Q9BYJ9 559 aaKnown RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 TINAGL1Q9GZM7 467 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 NECAP2Q9NVZ3 263 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 COMMD3Q9UBI1 195 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 FABP7O15540 132 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 HSPA12AO43301 675 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 RBMXL2O75526 392 aaKnown RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 RPLP1P05386 114 aaKnown RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 VDAC2P45880 294 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 RFX2P48378 723 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 SERPINB10P48595 397 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 RPL30P62888 115 aaKnown RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 ARFRP1Q13795 201 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 PRR31Q5SQ13 230 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 OR2AK2Q8NG84 335 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 OR56B1Q8NGI3 324 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 OR2D2Q9H210 308 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 NCOR1P1Q9H4R4 102 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 KCNIP1Q9NZI2 227 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 HSF4Q9ULV5 492 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 NBEAL2Q6ZNJ1 2754 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 YPEL1O60688 119 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 HPGDSO60760 199 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 GAPDHP04406 335 aaKnown RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 ZNF816Q0VGE8 651 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 MMDQ15546 238 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 AANATQ16613 207 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 C6orf183Q5T699 404 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 ZNF833PQ6ZTB9 187 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 C8orf86Q6ZUL3 223 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 CENPVQ7Z7K6 275 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 SAMD12Q8N8I0 201 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 FCGR1BQ92637 280 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 R3HDM4Q96D70 268 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 YPEL2Q96QA6 119 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 PRSS22Q9GZN4 317 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 SDHAF2Q9NX18 166 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 SELENOKQ9Y6D0 94 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 A0A087WXM4 84 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 TRDCB7Z8K6 153 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 H0YJW9 148 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 FAM106CPP0CH98 169 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 RPA2P15927 270 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 MNDAP41218 407 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 HTD2P86397 168 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 MRGPRG-AS1Q2M3A8 158 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 LINC00311Q8N616 119 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 OR52M1Q8NGK5 317 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 S1PR3Q99500 378 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 PCDHB16Q9NRJ7 776 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 JPT1Q9UK76 154 aa4.48□□□□□ -1.69
CPNE3-208ENST00000614678 MRPS7Q9Y2R9 242 aaKnown RBP4.48□□□□□ -1.69
CPNE3-208ENST00000614678 ATP6V0E1O15342 81 aa4.47□□□□□ -1.69
CPNE3-208ENST00000614678 EGR2P11161 476 aaPredicted RBP4.47□□□□□ -1.69
CPNE3-208ENST00000614678 BRS3P32247 399 aa4.47□□□□□ -1.69
CPNE3-208ENST00000614678 CEACAM3P40198 252 aa4.47□□□□□ -1.69
CPNE3-208ENST00000614678 HACD4Q5VWC8 232 aa4.47□□□□□ -1.69
CPNE3-208ENST00000614678 MOB4Q9Y3A3 225 aa4.47□□□□□ -1.69
CPNE3-208ENST00000614678 TENM3Q9P273 2699 aa4.47□□□□□ -1.69
CPNE3-208ENST00000614678 IGHV7-81A0A0B4J1V7 117 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms