RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 C13orf42A0A1B0GVH6 325 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 A0A1W2PPK0 400 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 MAGEA13PA6NCF6 341 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 SLC22A1O15245 554 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 HSPA12AO43301 675 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 BAG2O95816 211 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 SAA2P0DJI9 122 aaPredicted RBP7.4□□□□□ -1.22
VRK3-224ENST00000601849 CNTFRP26992 372 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 CRIP2P52943 208 aaPredicted RBP7.4□□□□□ -1.22
VRK3-224ENST00000601849 MOGAT2Q3SYC2 334 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 DMKNQ6E0U4 476 aaPredicted RBP7.4□□□□□ -1.22
VRK3-224ENST00000601849 XAF1Q6GPH4 301 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 ZNF562Q6V9R5 426 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 ODF3L1Q8IXM7 274 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 SETD9Q8NE22 299 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 SETD6Q8TBK2 473 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 EDARADDQ8WWZ3 215 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 RITA1Q96K30 269 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 Q96M66 194 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 MS4A10Q96PG2 267 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 TSNAXQ99598 290 aaKnown RBP7.4□□□□□ -1.22
VRK3-224ENST00000601849 SLC29A1Q99808 456 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 SPATA25Q9BR10 227 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 ALX4Q9H161 411 aaPredicted RBP7.4□□□□□ -1.22
VRK3-224ENST00000601849 RIMS4Q9H426 269 aaPredicted RBP7.4□□□□□ -1.22
VRK3-224ENST00000601849 FBXL15Q9H469 300 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 TUBA4BQ9H853 241 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 CNOT2Q9NZN8 540 aaKnown RBP7.4□□□□□ -1.22
VRK3-224ENST00000601849 MGAT4AQ9UM21 535 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 WASHC3Q9Y3C0 194 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 NUBP2Q9Y5Y2 271 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 EPPK1P58107 5090 aaKnown RBP7.39□□□□□ -1.23
VRK3-224ENST00000601849 STAB2Q8WWQ8 2551 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 TRAV8-7A0A075B6U6 113 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 IGHV4OR15-8A0A075B7B6 117 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 A0A087WW49 117 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 TRIM64CA6NLI5 447 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 A8MZ25 164 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 CNIH1O95406 144 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 IGHV3-11P01762 117 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 TRGV3P03979 118 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 IGHV4-30-4P0DP06 118 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 ARSBP15848 533 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 CPEP16870 476 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 ZBTB25P24278 435 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 RANBP1P43487 201 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 OR3A3P47888 321 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 GNMTQ14749 295 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 SMN1Q16637 294 aaKnown RBP7.39□□□□□ -1.23
VRK3-224ENST00000601849 LRRC36Q1X8D7 754 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 TTC23Q5W5X9 447 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 GLT8D1Q68CQ7 371 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 ZFAND6Q6FIF0 208 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 FAM131AQ6UXB0 335 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 GTSCR1Q86UQ5 136 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 LFNGQ8NES3 379 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 OR13C5Q8NGS8 318 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 MRPL30Q8TCC3 161 aaKnown RBP7.39□□□□□ -1.23
VRK3-224ENST00000601849 FAM46BQ96A09 425 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 ORAI1Q96D31 301 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 RHOVQ96L33 236 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 OR14A2Q96R54 314 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 CLCC1Q96S66 551 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 TM2D3Q9BRN9 247 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 SMPD3Q9NY59 655 aaPredicted RBP7.39□□□□□ -1.23
VRK3-224ENST00000601849 METTL1Q9UBP6 276 aaKnown RBP7.39□□□□□ -1.23
VRK3-224ENST00000601849 SLC23A1Q9UHI7 598 aa7.39□□□□□ -1.23
VRK3-224ENST00000601849 TRBV5-7A0A0A0MS05 114 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 ERICH4A6NGS2 130 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 H3BNX3 289 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 H3BUA1 57 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 ITGB1BP1O14713 200 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 WBP4O75554 376 aaKnown RBP7.38□□□□□ -1.23
VRK3-224ENST00000601849 JTBO76095 146 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 APOA2P02652 100 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 AADACP22760 399 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 CBX3Q13185 183 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 HMGN3Q15651 99 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 MOB1BQ7L9L4 216 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 KCNG3Q8TAE7 436 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 CASTOR1Q8WTX7 329 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 APH1BQ8WW43 257 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 TMEM68Q96MH6 324 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 FAAP24Q9BTP7 215 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 TPSG1Q9NRR2 321 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 PLEKHJ1Q9NW61 149 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 ZNF221Q9UK13 617 aa7.38□□□□□ -1.23
VRK3-224ENST00000601849 PNMA8CA0A1B0GUJ8 204 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 EFCAB10A6NFE3 127 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 FCN1O00602 326 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 MYL12BO14950 172 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 ST8SIA5O15466 376 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 SOX15O60248 233 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 SPDEFO95238 335 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 BPNT1O95861 308 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 IGLV1-51P01701 117 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 CD1AP06126 327 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 CT45A6P0DMU7 189 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 CT45A5P0DMU8 189 aa7.37□□□□□ -1.23
VRK3-224ENST00000601849 CT45A7P0DMV0 189 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms