RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SAA2-SAA4A0A096LPE2 208 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 ITGB1BP1O14713 200 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 HSPA12AO43301 675 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 LANCL1O43813 399 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 RGS11O94810 467 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 APOA1P02647 267 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 SAA2P0DJI9 122 aaPredicted RBP11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 MNDAP41218 407 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 KIR2DS4P43632 304 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 EBI3Q14213 229 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 KIR2DS1Q14954 304 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 C12orf54Q6X4T0 127 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 ZNF833PQ6ZTB9 187 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 OR2AK2Q8NG84 335 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 PHF21AQ96BD5 680 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 RITA1Q96K30 269 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 RBM14Q96PK6 669 aaKnown RBP11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 NABP2Q9BQ15 211 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 MRPL20Q9BYC9 149 aaKnown RBP11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 MMP24Q9Y5R2 645 aa11.34□□□□□ -0.59
SHKBP1-217ENST00000598558 CLPSL1A2RUU4 121 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 IGKV1D-33P01593 117 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 IGKV1-33P01594 117 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 CT45A6P0DMU7 189 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 CT45A5P0DMU8 189 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 CT45A7P0DMV0 189 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 IL3RAP26951 378 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 PITPNAQ00169 270 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 LIAT1Q6ZQX7 453 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 HOGA1Q86XE5 327 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 TGIF2LXQ8IUE1 241 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 H1FOOQ8IZA3 346 aaPredicted RBP11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 Q8N6K4 173 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 OR4F5Q8NH21 305 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 SNAPC3Q92966 411 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 EAF1Q96JC9 268 aaPredicted RBP11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 CMTM3Q96MX0 182 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 BCL7BQ9BQE9 202 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 SLC25A33Q9BSK2 321 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 PITPNC1Q9UKF7 332 aa11.33□□□□□ -0.6
SHKBP1-217ENST00000598558 STAB1Q9NY15 2570 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 OR2F2O95006 317 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 OR8U9P0C7N5 309 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 CD1BP29016 333 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 PROK1P58294 105 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 LSAMPQ13449 338 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 TMEM69Q5SWH9 247 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 HIST2H2BDQ6DRA6 164 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 GLDNQ6ZMI3 551 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 Q8N2B8 174 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 OR8U1Q8NH10 309 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 OR10J5Q8NHC4 309 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 SLIRPQ9GZT3 109 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 BEX1Q9HBH7 125 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 PLSCR3Q9NRY6 295 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 ANXA10Q9UJ72 324 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 ANAPC10Q9UM13 185 aa11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 MRPS7Q9Y2R9 242 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-217ENST00000598558 J3QRK9 145 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 DIRAS3O95661 229 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 FAM106CPP0CH98 169 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 TMEM11P17152 192 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 NFYAP23511 347 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 HES1Q14469 280 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 MZT2AQ6P582 158 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 CNIH2Q6PI25 160 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 LAX1Q8IWV1 398 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 DRAXINQ8NBI3 349 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 BEST4Q8NFU0 473 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 ZNF747Q9BV97 191 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 RAB18Q9NP72 206 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 SERTAD4Q9NUC0 356 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 RNF114Q9Y508 228 aa11.31□□□□□ -0.6
SHKBP1-217ENST00000598558 ANK2Q01484 3957 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 IGKV1D-13A0A0B4J2D9 117 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 FAM25AB3EWG3 89 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 FAM25CB3EWG5 89 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 FAM25GB3EWG6 89 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 RAB29O14966 203 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 IGKV1-13P0DP09 117 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 CNTFRP26992 372 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 PRSS3P35030 304 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 ARHGDIBP52566 201 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 F2RL1P55085 397 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 TMEM95Q3KNT9 176 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 SNX29P2Q8IUI4 249 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 LYSMD2Q8IV50 215 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 C3orf56Q8N813 242 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 GPX8Q8TED1 209 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 EDARADDQ8WWZ3 215 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 AP3S1Q92572 193 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 ABHD1Q96SE0 405 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 NPFFR1Q9GZQ6 430 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 RANBP3Q9H6Z4 567 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 CCDC59Q9P031 241 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 PIPOXQ9P0Z9 390 aa11.3□□□□□ -0.6
SHKBP1-217ENST00000598558 HAX1O00165 279 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 TUSC2O75896 110 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 NAT1P18440 290 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 ABCA11PQ4W5N1 156 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms