RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 AGMATQ9BSE5 352 aa20.64■□□□□ 0.89
TRIM28-204ENST00000594806 C11orf54Q9H0W9 315 aaPredicted RBP20.64■□□□□ 0.89
TRIM28-204ENST00000594806 SSX5O60225 188 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 SNRNP70P08621 437 aaKnown RBP20.63■□□□□ 0.89
TRIM28-204ENST00000594806 CD24P25063 80 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 REG1BP48304 166 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 SPCS2Q15005 226 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 CNIH2Q6PI25 160 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 ZNF833PQ6ZTB9 187 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 LINC01006Q8NI28 216 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 MAFIPQ8WZ33 124 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 SLC25A33Q9BSK2 321 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 RDH8Q9NYR8 311 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 STAB1Q9NY15 2570 aa20.63■□□□□ 0.89
TRIM28-204ENST00000594806 BET1O15155 118 aa20.62■□□□□ 0.89
TRIM28-204ENST00000594806 ST8SIA5O15466 376 aa20.62■□□□□ 0.89
TRIM28-204ENST00000594806 IGSF11Q5DX21 431 aa20.62■□□□□ 0.89
TRIM28-204ENST00000594806 TAF15Q92804 592 aaKnown RBP eCLIP20.62■□□□□ 0.891e-6■□□□□ 9.7
TRIM28-204ENST00000594806 GINS4Q9BRT9 223 aa20.62■□□□□ 0.89
TRIM28-204ENST00000594806 PRSS22Q9GZN4 317 aa20.62■□□□□ 0.89
TRIM28-204ENST00000594806 SAA2-SAA4A0A096LPE2 208 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 EIF4EP06730 217 aaKnown RBP20.61■□□□□ 0.89
TRIM28-204ENST00000594806 SAA2P0DJI9 122 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-204ENST00000594806 HES1Q14469 280 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 Q8N2B8 174 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 OR2T10Q8NGZ9 312 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 OR2T6Q8NHC8 308 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 ISOC1Q96CN7 298 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 ZNF747Q9BV97 191 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 ANXA10Q9UJ72 324 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 RNF114Q9Y508 228 aa20.61■□□□□ 0.89
TRIM28-204ENST00000594806 IGKV1D-8A0A087WSZ0 117 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 IGKV1D-33P01593 117 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 IGKV1-33P01594 117 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 TMEM11P17152 192 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 TAS2R20P59543 309 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 HOGA1Q86XE5 327 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 ZNF436-AS1Q8NC38 126 aaPredicted RBP20.6■□□□□ 0.89
TRIM28-204ENST00000594806 CCDC59Q9P031 241 aaKnown RBP20.6■□□□□ 0.89
TRIM28-204ENST00000594806 ZNF221Q9UK13 617 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 GAB2Q9UQC2 676 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 CEPT1Q9Y6K0 416 aa20.6■□□□□ 0.89
TRIM28-204ENST00000594806 H3BMQ9 156 aa20.59■□□□□ 0.89
TRIM28-204ENST00000594806 HPGDSO60760 199 aa20.59■□□□□ 0.89
TRIM28-204ENST00000594806 TPPPO94811 219 aa20.59■□□□□ 0.89
TRIM28-204ENST00000594806 BEST4Q8NFU0 473 aa20.59■□□□□ 0.89
TRIM28-204ENST00000594806 DYNC2LI1Q8TCX1 351 aa20.59■□□□□ 0.89
TRIM28-204ENST00000594806 PARP12Q9H0J9 701 aaKnown RBP20.59■□□□□ 0.89
TRIM28-204ENST00000594806 MOB4Q9Y3A3 225 aa20.59■□□□□ 0.89
TRIM28-204ENST00000594806 MOSP00540 346 aa20.58■□□□□ 0.89
TRIM28-204ENST00000594806 ELK1P19419 428 aa20.58■□□□□ 0.89
TRIM28-204ENST00000594806 OR3A3P47888 321 aa20.58■□□□□ 0.89
TRIM28-204ENST00000594806 LSAMPQ13449 338 aa20.58■□□□□ 0.89
TRIM28-204ENST00000594806 H1FOOQ8IZA3 346 aaPredicted RBP20.58■□□□□ 0.89
TRIM28-204ENST00000594806 OR8H1Q8NGG4 311 aa20.58■□□□□ 0.89
TRIM28-204ENST00000594806 ABHD14BQ96IU4 210 aa20.58■□□□□ 0.89
TRIM28-204ENST00000594806 EAF1Q96JC9 268 aaPredicted RBP20.58■□□□□ 0.89
TRIM28-204ENST00000594806 NABP2Q9BQ15 211 aa20.58■□□□□ 0.89
TRIM28-204ENST00000594806 ZNF251Q9BRH9 671 aa20.58■□□□□ 0.89
TRIM28-204ENST00000594806 FGF16O43320 207 aa20.57■□□□□ 0.88
TRIM28-204ENST00000594806 PRSS3P35030 304 aa20.57■□□□□ 0.88
TRIM28-204ENST00000594806 GPR12P47775 334 aa20.57■□□□□ 0.88
TRIM28-204ENST00000594806 PROK1P58294 105 aa20.57■□□□□ 0.88
TRIM28-204ENST00000594806 ZNF702PQ9H963 129 aa20.57■□□□□ 0.88
TRIM28-204ENST00000594806 IGHV3-72A0A0B4J1Y9 119 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 FAM25AB3EWG3 89 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 FAM25CB3EWG5 89 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 FAM25GB3EWG6 89 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 HLA-DQB1P01920 261 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 ARPC4P59998 168 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 SHISA2Q6UWI4 295 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 Q8N6K4 173 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 C15orf40Q8WUR7 153 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 MRPL20Q9BYC9 149 aaKnown RBP20.56■□□□□ 0.88
TRIM28-204ENST00000594806 SCPEP1Q9HB40 452 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 IFT46Q9NQC8 304 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 ADAM30Q9UKF2 790 aa20.56■□□□□ 0.88
TRIM28-204ENST00000594806 ZNF701M0R085 212 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-204ENST00000594806 MC5RP33032 325 aa20.55■□□□□ 0.88
TRIM28-204ENST00000594806 BLCAPP62952 87 aa20.55■□□□□ 0.88
TRIM28-204ENST00000594806 GVQW1Q8N7I0 195 aa20.55■□□□□ 0.88
TRIM28-204ENST00000594806 WFDC12Q8WWY7 111 aa20.55■□□□□ 0.88
TRIM28-204ENST00000594806 RNF150Q9ULK6 438 aa20.55■□□□□ 0.88
TRIM28-204ENST00000594806 RBM7Q9Y580 266 aaKnown RBP20.55■□□□□ 0.88
TRIM28-204ENST00000594806 OR5H14A6NHG9 310 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 SULT1C2O00338 296 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 OR8U9P0C7N5 309 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 PTHLHP12272 177 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 HNF4GQ14541 408 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 FBLN7Q53RD9 439 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 RPL39P5Q59GN2 51 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 OR8U1Q8NH10 309 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 NECAP2Q9NVZ3 263 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 ANAPC10Q9UM13 185 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 MRPS7Q9Y2R9 242 aaKnown RBP20.54■□□□□ 0.88
TRIM28-204ENST00000594806 OR2W1Q9Y3N9 320 aa20.54■□□□□ 0.88
TRIM28-204ENST00000594806 CCDC160A6NGH7 325 aa20.53■□□□□ 0.88
TRIM28-204ENST00000594806 ZNF736B4DX44 427 aaPredicted RBP20.53■□□□□ 0.88
TRIM28-204ENST00000594806 SLC22A5O76082 557 aa20.53■□□□□ 0.88
TRIM28-204ENST00000594806 CT45A6P0DMU7 189 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms