RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TAGLN2P37802 199 aaKnown RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 THBS3P49746 956 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 ZNF266Q14584 549 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 HAGHQ16775 308 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 SP6Q3SY56 376 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 ZNF738Q8NE65 137 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 SLX1AQ9BQ83 275 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 OR2W1Q9Y3N9 320 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 KPTNQ9Y664 436 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 PPYP01298 95 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 RRASP10301 218 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 PPP1CCP36873 323 aaKnown RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 CD81P60033 236 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 RPL11P62913 178 aaKnown RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 OR10P1Q8NGE3 313 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 SCARB1Q8WTV0 552 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 HBZP02008 142 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 GAPDHP04406 335 aaKnown RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 ACAA1P09110 424 aaPredicted RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 ACKR3P25106 362 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 TAS2R60P59551 318 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 TMEM267Q0VDI3 215 aaPredicted RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 CD200R1LQ6Q8B3 271 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 RPRMLQ8N4K4 120 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 RBMXL1Q96E39 390 aaKnown RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 ZNF107Q9UII5 783 aaPredicted RBP8.38□□□□□ -1.07
LIG3-216ENST00000593099 GAB2Q9UQC2 676 aa8.38□□□□□ -1.07
LIG3-216ENST00000593099 CTDSPLO15194 276 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 SURF2Q15527 256 aaPredicted RBP8.37□□□□□ -1.07
LIG3-216ENST00000593099 Q6ZRG5 221 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 ZNF383Q8NA42 475 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 NABP1Q96AH0 204 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 TRAF4Q9BUZ4 470 aaPredicted RBP8.37□□□□□ -1.07
LIG3-216ENST00000593099 CALYQ9NYX4 217 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 THYN1Q9P016 225 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 A0A0B4J293 547 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 NDUFB6O95139 128 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 NPBWR2P48146 333 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 DSCR9P59020 149 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 PLP1P60201 277 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 FLYWCH2Q96CP2 140 aaKnown RBP8.37□□□□□ -1.07
LIG3-216ENST00000593099 C2orf50Q96LR7 162 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 HSD17B10Q99714 261 aaKnown RBP8.37□□□□□ -1.07
LIG3-216ENST00000593099 ABHD14AQ9BUJ0 271 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 NAA60Q9H7X0 242 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 C3orf85A0A1B0GTC6 90 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 A0A1B0GTI1 187 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 OR7C2O60412 319 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 OR2C1O95371 312 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 CTSDP07339 412 aaPredicted RBP8.37□□□□□ -1.07
LIG3-216ENST00000593099 IAPPP10997 89 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 TMEM183BQ1AE95 376 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 TMEM30BQ3MIR4 351 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 HOGA1Q86XE5 327 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 POC1AQ8NBT0 407 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 PHYHIPLQ96FC7 376 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 HDHD3Q9BSH5 251 aaPredicted RBP8.37□□□□□ -1.07
LIG3-216ENST00000593099 CRIM1Q9NZV1 1036 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 TMED3Q9Y3Q3 217 aa8.37□□□□□ -1.07
LIG3-216ENST00000593099 WNT9BO14905 357 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 HSBP1O75506 76 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 TGFAP01135 160 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 FCGR3AP08637 254 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 FGF2P09038 288 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 ZP3P21754 424 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 DMRTA1Q5VZB9 504 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 OR4A47Q6IF82 309 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 LAIR2Q6ISS4 152 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 TMEM65Q6PI78 240 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 ASCL4Q6XD76 172 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 ACP7Q6ZNF0 438 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 TMEM230Q96A57 120 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 IDI2-AS1Q9NZ38 188 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 URGCP-MRPS24S4R325 110 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 A0A1W2PPE3 182 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 ANKRD20A5PA0PJZ0 165 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 ZNF729A6NN14 1252 aaPredicted RBP8.36□□□□□ -1.07
LIG3-216ENST00000593099 CRYGSP22914 178 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 HTR1DP28221 377 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 CCKARP32238 428 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 TOMM20LQ6UXN7 152 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 FAM169BQ8N8A8 192 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 SAT2Q96F10 170 aaPredicted RBP8.36□□□□□ -1.07
LIG3-216ENST00000593099 SSBP3Q9BWW4 388 aaPredicted RBP8.36□□□□□ -1.07
LIG3-216ENST00000593099 PITPNC1Q9UKF7 332 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 HSF4Q9ULV5 492 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 SCN8AQ9UQD0 1980 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 A0A0A6YYJ9 748 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 GSTZ1O43708 216 aaPredicted RBP8.36□□□□□ -1.07
LIG3-216ENST00000593099 LANCL1O43813 399 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 SSSCA1O60232 199 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 FBXO24O75426 580 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 EFNA4P52798 201 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 MMDQ15546 238 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 TNXAQ16473 311 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 ZCCHC24Q8N2G6 241 aaKnown RBP8.36□□□□□ -1.07
LIG3-216ENST00000593099 YIPF5Q969M3 257 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 MAGT1Q9H0U3 335 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 RBM38Q9H0Z9 239 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms