RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 A0A087WW49 117 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 EFCAB10A6NFE3 127 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 ITGB1BP1O14713 200 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 RBBP9O75884 186 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 MC5RP33032 325 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 PITPNAQ00169 270 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 TMEM267Q0VDI3 215 aaPredicted RBP9.15□□□□□ -0.94
LIG3-209ENST00000586435 LRRC36Q1X8D7 754 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 ZNF880Q6PDB4 577 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 OVCH2Q7RTZ1 564 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 C5orf24Q7Z6I8 188 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 SVOPQ8N4V2 548 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 SETD9Q8NE22 299 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 ARPC1AQ92747 370 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 FAM46BQ96A09 425 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 FLYWCH2Q96CP2 140 aaKnown RBP9.15□□□□□ -0.94
LIG3-209ENST00000586435 NEDD4LQ96PU5 975 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 CITED4Q96RK1 184 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 RNF5Q99942 180 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 SULT4A1Q9BR01 284 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 TM2D3Q9BRN9 247 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 FBXL15Q9H469 300 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 ABRACLQ9P1F3 81 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 SLC23A1Q9UHI7 598 aa9.15□□□□□ -0.94
LIG3-209ENST00000586435 RYR2Q92736 4967 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 TRIM64CA6NLI5 447 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 A8MZ25 164 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 H0YJW9 148 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 ST8SIA5O15466 376 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 BAG2O95816 211 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 NAPSAO96009 420 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 HSPB1P04792 205 aaKnown RBP9.14□□□□□ -0.95
LIG3-209ENST00000586435 CT45A6P0DMU7 189 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 CT45A5P0DMU8 189 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 CT45A7P0DMV0 189 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 EGR2P11161 476 aaPredicted RBP9.14□□□□□ -0.95
LIG3-209ENST00000586435 LYL1P12980 280 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 WNT4P56705 351 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 RPS27AP62979 156 aaKnown RBP9.14□□□□□ -0.95
LIG3-209ENST00000586435 ST3GAL4Q11206 333 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 AKIRIN2Q53H80 203 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 TTC23Q5W5X9 447 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 MOB1BQ7L9L4 216 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 OR5AN1Q8NGI8 311 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 GGHQ92820 318 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 TM2D1Q9BX74 207 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 SLA2Q9H6Q3 261 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 CNOT2Q9NZN8 540 aaKnown RBP9.14□□□□□ -0.95
LIG3-209ENST00000586435 WASHC3Q9Y3C0 194 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 TNCP24821 2201 aa9.14□□□□□ -0.95
LIG3-209ENST00000586435 TRBV6-6A0A0A6YYG2 114 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 PNMA8CA0A1B0GUJ8 204 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 HSPA12AO43301 675 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 SPDEFO95238 335 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 CELP19835 753 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 PLGLAQ15195 96 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 ACTBL2Q562R1 376 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 RPL39P5Q59GN2 51 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 PPP1R27Q86WC6 154 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 IL1F10Q8WWZ1 152 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 RHOVQ96L33 236 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 OR4C12Q96R67 309 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 AGMATQ9BSE5 352 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 TMEM59Q9BXS4 323 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 C8orf4Q9NR00 106 aa9.13□□□□□ -0.95
LIG3-209ENST00000586435 LCE6AA0A183 80 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 FCN1O00602 326 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 MYL12BO14950 172 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 LDLRAD4O15165 306 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 IGLV1-51P01701 117 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 TFAP2AP05549 437 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 GSTP1P09211 210 aaKnown RBP9.12□□□□□ -0.95
LIG3-209ENST00000586435 CD40LGP29965 261 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 TPPP2P59282 170 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 C1orf100Q5SVJ3 147 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 UNQ5815/PRO19632Q6UWF5 114 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 ZNF562Q6V9R5 426 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 GLDNQ6ZMI3 551 aaPredicted RBP9.12□□□□□ -0.95
LIG3-209ENST00000586435 C6orf201Q7Z4U5 140 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 KCNG3Q8TAE7 436 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 ABHD5Q8WTS1 349 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 CASTOR1Q8WTX7 329 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 CYGBQ8WWM9 190 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 EDARADDQ8WWZ3 215 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 PHYHIPQ92561 330 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 LYSTQ99698 3801 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 FAAP24Q9BTP7 215 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 ELOVL1Q9BW60 279 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 RIMS4Q9H426 269 aaPredicted RBP9.12□□□□□ -0.95
LIG3-209ENST00000586435 PALMDQ9NP74 551 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 C19orf73Q9NVV2 129 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 STUB1Q9UNE7 303 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 GAB2Q9UQC2 676 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 A3GALT2U3KPV4 340 aa9.12□□□□□ -0.95
LIG3-209ENST00000586435 H3BUA1 57 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 H7C2Y5 167 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 SLC22A1O15245 554 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 IGHV3-11P01762 117 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 IGHV4-30-4P0DP06 118 aa9.11□□□□□ -0.95
LIG3-209ENST00000586435 CD37P11049 281 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms