RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	LSAMP	Q13449	338 aa		12.92	□□□□□ -0.34
ERBB2-222	ENST00000584908	ABCA11P	Q4W5N1	156 aa		12.92	□□□□□ -0.34
ERBB2-222	ENST00000584908	MRPS26	Q9BYN8	205 aa	Known RBP	12.92	□□□□□ -0.34
ERBB2-222	ENST00000584908	C11orf54	Q9H0W9	315 aa	Predicted RBP	12.92	□□□□□ -0.34
ERBB2-222	ENST00000584908	DCSTAMP	Q9H295	470 aa		12.92	□□□□□ -0.34
ERBB2-222	ENST00000584908	ELF5	Q9UKW6	265 aa	Predicted RBP	12.92	□□□□□ -0.34
ERBB2-222	ENST00000584908	TRBV6-7	A0A0A0MS04	114 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	ZNF736	B4DX44	427 aa	Predicted RBP	12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	RAB29	O14966	203 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	ST8SIA5	O15466	376 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	HSPA12A	O43301	675 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	VDAC2	P45880	294 aa	Predicted RBP	12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	OR3A3	P47888	321 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	LSM3	P62310	102 aa	Known RBP	12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	PITPNA	Q00169	270 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	ARFRP1	Q13795	201 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	HNF4G	Q14541	408 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	PNLIPRP3	Q17RR3	467 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	ANKRD13B	Q86YJ7	626 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	OR8H1	Q8NGG4	311 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	SLC25A46	Q96AG3	418 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	NABP2	Q9BQ15	211 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	ABCG5	Q9H222	651 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	PLSCR3	Q9NRY6	295 aa		12.91	□□□□□ -0.34
ERBB2-222	ENST00000584908	TMEM235	A6NFC5	223 aa		12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	GSTT2	P0CG29	244 aa		12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	GSTT2B	P0CG30	244 aa		12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	VSIG10L2	P0DP72	767 aa		12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	TALDO1	P37837	337 aa		12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	ALDH3B2	P48448	385 aa		12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	TMEM95	Q3KNT9	176 aa		12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	KCTD12	Q96CX2	325 aa	Known RBP	12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	S1PR3	Q99500	378 aa		12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	MRPL20	Q9BYC9	149 aa	Known RBP	12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	ZNF230	Q9UIE0	474 aa	Predicted RBP	12.9	□□□□□ -0.34
ERBB2-222	ENST00000584908	IGKV1D-8	A0A087WSZ0	117 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908		M0QZ24	198 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	PROP1	O75360	226 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	GABARAP	O95166	117 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	TFAP2A	P05549	437 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	NCS1	P62166	190 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	CTF1	Q16619	201 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	IGSF11	Q5DX21	431 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	ARSJ	Q5FYB0	599 aa	Predicted RBP	12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	FAM71E2	Q8N5Q1	922 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	MAFIP	Q8WZ33	124 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	PHF21A	Q96BD5	680 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	RDH8	Q9NYR8	311 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	GAB2	Q9UQC2	676 aa		12.89	□□□□□ -0.35
ERBB2-222	ENST00000584908	SSX5	O60225	188 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	IGHG2	P01859	326 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	VBP1	P61758	197 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	RPL39P5	Q59GN2	51 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908		Q8N9W7	124 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	OR10J5	Q8NHC4	309 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	NUDCD2	Q8WVJ2	157 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	ABHD14B	Q96IU4	210 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	DIABLO	Q9NR28	239 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	LIN7C	Q9NUP9	197 aa	Known RBP	12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	SH2D7	A6NKC9	451 aa	Predicted RBP	12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	BET1	O15155	118 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	CT45A6	P0DMU7	189 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	CT45A5	P0DMU8	189 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	CT45A7	P0DMV0	189 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	GNG2	P59768	71 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	UBE2NL	Q5JXB2	153 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	NAA50	Q9GZZ1	169 aa	Known RBP	12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	AUNIP	Q9H7T9	357 aa		12.88	□□□□□ -0.35
ERBB2-222	ENST00000584908	TRAV18	A0A075B6X5	111 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	OR5H14	A6NHG9	310 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	NCBP2L	A6PVI3	153 aa	Known RBP	12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	XRCC3	O43542	346 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	PEX14	O75381	377 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	FBXO24	O75426	580 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	CTXN2	P0C2S0	81 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	F2RL1	P55085	397 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	C2orf68	Q2NKX9	166 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	TREML4	Q6UXN2	200 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	H1FOO	Q8IZA3	346 aa	Predicted RBP	12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	OR5AN1	Q8NGI8	311 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	S100A16	Q96FQ6	103 aa	Known RBP	12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	CMTM3	Q96MX0	182 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	ZNF221	Q9UK13	617 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	CMYA5	Q8N3K9	4069 aa		12.87	□□□□□ -0.35
ERBB2-222	ENST00000584908	MEGF8	Q7Z7M0	2845 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	CD28	P10747	220 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	MC5R	P33032	325 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	ACTB	P60709	375 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	CD83	Q01151	205 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	C9orf152	Q5JTZ5	239 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	CNIH2	Q6PI25	160 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	SAMD12	Q8N8I0	201 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	NPB	Q8NG41	125 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	OR5AU1	Q8NGC0	362 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	ST6GALNAC5	Q9BVH7	336 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	ANXA10	Q9UJ72	324 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908	RNF150	Q9ULK6	438 aa		12.86	□□□□□ -0.35
ERBB2-222	ENST00000584908		H0YJW9	148 aa		12.85	□□□□□ -0.35
ERBB2-222	ENST00000584908	NDUFA3	O95167	84 aa		12.85	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms