RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 TMEM185AQ8NFB2 350 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 OR4A4PQ8NGN8 299 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 CLDND2Q8NHS1 167 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 COQ8AQ8NI60 647 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 ITLN1Q8WWA0 313 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 TMEM186Q96B77 213 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 ZNF436Q9C0F3 470 aaPredicted RBP8.46□□□□□ -1.06
SS18-221ENST00000582448 RANBP3Q9H6Z4 567 aaPredicted RBP8.46□□□□□ -1.06
SS18-221ENST00000582448 SEBOXQ9HB31 216 aaPredicted RBP8.46□□□□□ -1.06
SS18-221ENST00000582448 TMEM165Q9HC07 324 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 GPR132Q9UNW8 380 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 PPP1R3CQ9UQK1 317 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 VSIG4Q9Y279 399 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 KCNIP3Q9Y2W7 256 aa8.46□□□□□ -1.06
SS18-221ENST00000582448 IGKV1D-8A0A087WSZ0 117 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 TEX13DA0A0J9YY54 714 aaPredicted RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 C17orf100A8MU93 164 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 FAM157AC9JC47 383 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 WNT9BO14905 357 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 SLC22A5O76082 557 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 DUS4LO95620 317 aaKnown RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 CTSDP07339 412 aaPredicted RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 CD55P08174 381 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 COL8A2P25067 703 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 LMO1P25800 156 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 ERP29P30040 261 aaKnown RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 RAP2BP61225 183 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 HLA-DRB3P79483 266 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 DEFA6Q01524 100 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 CD300CQ08708 224 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 SCGB2A2Q13296 93 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 ATXN7L3Q14CW9 347 aaPredicted RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 AWAT1Q58HT5 328 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 C6orf183Q5T699 404 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 SLC35E4Q6ICL7 350 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 TRAT1Q6PIZ9 186 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 ZNF497Q6ZNH5 498 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 Q6ZRM9 215 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 NOXA1Q86UR1 476 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 SLC38A6Q8IZM9 456 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 ASCC1Q8N9N2 400 aaKnown RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 CCDC71LQ8N9Z2 235 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 OR2AK2Q8NG84 335 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 OR52B4Q8NGK2 314 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 OR10J5Q8NHC4 309 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 MRPL30Q8TCC3 161 aaKnown RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 FAM216AQ8WUB2 273 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 TOMM40LQ969M1 308 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 ZNF486Q96H40 463 aaPredicted RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 FYTTD1Q96QD9 318 aaKnown RBP8.45□□□□□ -1.06
SS18-221ENST00000582448 SAP30LQ9HAJ7 183 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 RAB9BQ9NP90 201 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 SLC23A1Q9UHI7 598 aa8.45□□□□□ -1.06
SS18-221ENST00000582448 LOC105371242A0A075B767 164 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 KRTAP23-1A1A580 65 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 C9orf170A2RU37 121 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 OR5H14A6NHG9 310 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 RFPL4AA6NLU0 287 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 RFPL4AL1F8VTS6 287 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 GOSR2O14653 212 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 HSPA12AO43301 675 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 PPIHO43447 177 aaKnown RBP8.44□□□□□ -1.06
SS18-221ENST00000582448 C1QBP02746 253 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 MSMBP08118 114 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 GIPP09681 153 aaPredicted RBP8.44□□□□□ -1.06
SS18-221ENST00000582448 GABRA2P47869 451 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 UCP3P55916 312 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 FXYD4P59646 89 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 COL10A1Q03692 680 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 CD69Q07108 199 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 DHRS2Q13268 280 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 PPP1R1AQ13522 171 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 PDLIM3Q53GG5 364 aaPredicted RBP8.44□□□□□ -1.06
SS18-221ENST00000582448 AADACL3Q5VUY0 350 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 C17orf107Q6ZR85 190 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 FAM185AQ8N0U4 392 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 DRAXINQ8NBI3 349 aaPredicted RBP8.44□□□□□ -1.06
SS18-221ENST00000582448 OR11H7Q8NGC8 314 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 OR5D13Q8NGL4 314 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 CASTOR1Q8WTX7 329 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 CAPSLQ8WWF8 208 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 HYLS1Q96M11 299 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 PDCD10Q9BUL8 212 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 CHIAQ9BZP6 476 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 DNTTIP1Q9H147 329 aa8.44□□□□□ -1.06
SS18-221ENST00000582448 PIGBOS1A0A0B4J2F0 54 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 OOEPA6NGQ2 149 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 NKX6-3A6NJ46 265 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 PPYP01298 95 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 MUC1P15941 1255 aaPredicted RBP8.43□□□□□ -1.06
SS18-221ENST00000582448 CXCL3P19876 107 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 ZBTB25P24278 435 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 RBMXP38159 391 aaKnown RBP8.43□□□□□ -1.06
SS18-221ENST00000582448 CEBPDP49716 269 aaPredicted RBP8.43□□□□□ -1.06
SS18-221ENST00000582448 HILS1P60008 231 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 CCL8P80075 99 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 BAMBIQ13145 260 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 KCNJ8Q15842 424 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 IGSF11Q5DX21 431 aa8.43□□□□□ -1.06
SS18-221ENST00000582448 KRBOX4Q5JUW0 171 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms