RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 OR1E2P47887 323 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 OR10A3P58181 314 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 TMEM75Q8N9X5 138 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 SLX4Q8IY92 1834 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 ZNF532Q9HCE3 1301 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 TRAV41A0A0B4J266 112 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 A8MUN3 132 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 NDUFS8O00217 210 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 G6PCP35575 357 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 PSG3Q16557 428 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 LHFPL1Q86WI0 220 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 OR8B12Q8NGG6 310 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 OR5J2Q8NH18 312 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 TAMM41Q96BW9 452 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 CYSTM1Q9H1C7 97 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 FAM215AQ9Y5M1 114 aa1.43□□□□□ -2.18
SS18-214ENST00000580003 OR5K4A6NMS3 321 aa1.42□□□□□ -2.18
SS18-214ENST00000580003 CD7P09564 240 aa1.42□□□□□ -2.18
SS18-214ENST00000580003 RAB31Q13636 194 aa1.42□□□□□ -2.18
SS18-214ENST00000580003 CCDC112Q8NEF3 446 aa1.42□□□□□ -2.18
SS18-214ENST00000580003 OR51H1Q8NH63 302 aa1.42□□□□□ -2.18
SS18-214ENST00000580003 ACBD6Q9BR61 282 aa1.42□□□□□ -2.18
SS18-214ENST00000580003 MED28Q9H204 178 aa1.42□□□□□ -2.18
SS18-214ENST00000580003 SOX21Q9Y651 276 aaPredicted RBP1.42□□□□□ -2.18
SS18-214ENST00000580003 DSCAML1Q8TD84 2053 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 TMSB15BA0A087X1C1 80 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 RFPL4AA6NLU0 287 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 RFPL4AL1F8VTS6 287 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 SLC17A3O00476 420 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 CCL3P10147 92 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 SERPINB10P48595 397 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 TAS2R45P59539 299 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 SLC35E3Q7Z769 313 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 LRRC28Q86X40 367 aaPredicted RBP1.41□□□□□ -2.18
SS18-214ENST00000580003 PPWD1Q96BP3 646 aaKnown RBP1.41□□□□□ -2.18
SS18-214ENST00000580003 CCDC127Q96BQ5 260 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 MSANTD3Q96H12 275 aa1.41□□□□□ -2.18
SS18-214ENST00000580003 COL6A6A6NMZ7 2263 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 MALRD1Q5VYJ5 2156 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 ZNF705FA8MVS1 300 aaPredicted RBP1.4□□□□□ -2.19
SS18-214ENST00000580003 UGT2B11O75310 529 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 IGHV1-69P01742 117 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 ZNF728P0DKX0 622 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 XCL1P47992 114 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 IDH3GP51553 393 aaPredicted RBP1.4□□□□□ -2.19
SS18-214ENST00000580003 FAM3AP98173 230 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 SLC38A11Q08AI6 406 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 UGT2B28Q9BY64 529 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 SNX10Q9Y5X0 201 aa1.4□□□□□ -2.19
SS18-214ENST00000580003 IGKV2-40A0A087WW87 121 aaPredicted RBP1.39□□□□□ -2.19
SS18-214ENST00000580003 OR11H12B2RN74 326 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 SGCEO43556 437 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 PSMG1O95456 288 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 IGKV2D-40P01614 121 aaPredicted RBP1.39□□□□□ -2.19
SS18-214ENST00000580003 CCL2P13500 99 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 TMEM249Q2WGJ8 235 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 CNEP1R1Q8N9A8 125 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 OR11H2Q8NH07 326 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 C8orf4Q9NR00 106 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 MRM2Q9UI43 246 aaKnown RBP1.39□□□□□ -2.19
SS18-214ENST00000580003 DISP1Q96F81 1524 aa1.39□□□□□ -2.19
SS18-214ENST00000580003 UBE2L6O14933 153 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 IGLV3-27P01718 113 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 UCHL1P09936 223 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 CRYBB3P26998 211 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 TMEM258P61165 79 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 GLO1Q04760 184 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 C1DQ13901 141 aaKnown RBP1.38□□□□□ -2.19
SS18-214ENST00000580003 TBC1D28Q2M2D7 210 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 KRTAP5-10Q6L8G5 202 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 AMTNQ6UX39 209 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 PLCZ1Q86YW0 608 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 TNFAIP8L1Q8WVP5 186 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 CCDC124Q96CT7 223 aaKnown RBP1.38□□□□□ -2.19
SS18-214ENST00000580003 SLC35G5Q96KT7 338 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 GLS2Q9UI32 602 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 ENPP5Q9UJA9 477 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 HHLA3Q9XRX5 114 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 CLUHO75153 1309 aa1.38□□□□□ -2.19
SS18-214ENST00000580003 CCDC88CQ9P219 2028 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 TRGV5A0A0B4J1U4 118 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 MDFIC2A0A1B0GVS7 189 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 LIMS3P0CW19 117 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 LIMS4P0CW20 117 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 OR13C7P0DN81 318 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 LINC00313P59037 77 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 TMEM31Q5JXX7 168 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 CCDC12Q8WUD4 166 aaPredicted RBP1.37□□□□□ -2.19
SS18-214ENST00000580003 HBEGFQ99075 208 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
SS18-214ENST00000580003 KIAA0232Q92628 1395 aa1.36□□□□□ -2.19
SS18-214ENST00000580003 A0A1W2PQD3 144 aa1.36□□□□□ -2.19
SS18-214ENST00000580003 SULT1C2O00338 296 aa1.36□□□□□ -2.19
SS18-214ENST00000580003 LIN7AO14910 233 aaPredicted RBP1.36□□□□□ -2.19
SS18-214ENST00000580003 CTBP2P56545 445 aa1.36□□□□□ -2.19
SS18-214ENST00000580003 EXOC3L4Q17RC7 722 aa1.36□□□□□ -2.19
SS18-214ENST00000580003 ZNF791Q3KP31 576 aaPredicted RBP1.36□□□□□ -2.19
SS18-214ENST00000580003 NATD1Q8N6N6 113 aa1.36□□□□□ -2.19
SS18-214ENST00000580003 RORBQ92753 470 aa1.36□□□□□ -2.19
SS18-214ENST00000580003 ACY3Q96HD9 319 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms