RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SHISA2Q6UWI4 295 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 DEFB108BQ8NET1 73 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 OR5M8Q8NGP6 311 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 CCL17Q92583 94 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 SDSLQ96GA7 329 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 DUX5Q96PT3 197 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 OR2A7Q96R45 310 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 ZNF747Q9BV97 191 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 NCOR1P1Q9H4R4 102 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 NAA60Q9H7X0 242 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 RAB18Q9NP72 206 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 ESM1Q9NQ30 184 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 SLC2A9Q9NRM0 540 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 TMEM106BQ9NUM4 274 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 TRGV10A0A0A0MS01 117 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 IGHV1-69-2A0A0G2JMI3 117 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 ODAMA1E959 279 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.39□□□□□ -1.07
SS18-207ENST00000577636 NDUFA2O43678 99 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 ZNF737O75373 536 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 TUSC2O75896 110 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 HLA-GP17693 338 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 CEACAM6P40199 344 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 FOXL1Q12952 345 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 PHLDA2Q53GA4 152 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 STUMQ69YW2 141 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 TREML4Q6UXN2 200 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 Q6ZPA2 131 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 H1FOOQ8IZA3 346 aaPredicted RBP8.39□□□□□ -1.07
SS18-207ENST00000577636 TEX29Q8N6K0 151 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 ANGPTL6Q8NI99 470 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 NANPQ8TBE9 248 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 MRGPRDQ8TDS7 321 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 ARL11Q969Q4 196 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 TMEM230Q96A57 120 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 AKR1E2Q96JD6 320 aa8.39□□□□□ -1.07
SS18-207ENST00000577636 UBE2J1Q9Y385 318 aaPredicted RBP8.39□□□□□ -1.07
SS18-207ENST00000577636 TRAV39A0A0B4J263 110 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 IGKV1-6A0A0C4DH72 117 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 C3orf85A0A1B0GTC6 90 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 C12orf77C9JDV5 145 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 SMLR1H3BR10 107 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 TMEM178BH3BS89 294 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 MPPED1O15442 326 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 ZNF205O95201 554 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 SIX6O95475 246 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 HBZP02008 142 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 PET100P0DJ07 73 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 GLIPR1P48060 266 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 H2BFSP57053 126 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 RND3P61587 244 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 UBA52P62987 128 aaKnown RBP8.38□□□□□ -1.07
SS18-207ENST00000577636 HERPUD1Q15011 391 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 TMEM30BQ3MIR4 351 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 SPRNQ5BIV9 151 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 DCAF12L2Q5VW00 463 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 LGI3Q8N145 548 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 ZNRF1Q8ND25 227 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 OR10V1Q8NGI7 309 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 THAP6Q8TBB0 222 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 EDARADDQ8WWZ3 215 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 GALNT14Q96FL9 552 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 COQ2Q96H96 371 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 CCL13Q99616 98 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 C7orf69Q9H7B7 122 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 RDH8Q9NYR8 311 aa8.38□□□□□ -1.07
SS18-207ENST00000577636 hADV38S2A0JD32 116 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 HSD17B6O14756 317 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 SIGLEC5O15389 551 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 NDUFB3O43676 98 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 GYPAP02724 150 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 HKR1P10072 659 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 NDUFB7P17568 137 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 ZFP36P26651 326 aaKnown RBP8.37□□□□□ -1.07
SS18-207ENST00000577636 GNRHRP30968 328 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 NUP62P37198 522 aaPredicted RBP8.37□□□□□ -1.07
SS18-207ENST00000577636 SUPT4H1P63272 117 aaKnown RBP8.37□□□□□ -1.07
SS18-207ENST00000577636 HTD2P86397 168 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 LRRC10Q5BKY1 277 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 RBMS3Q6XE24 437 aaKnown RBP8.37□□□□□ -1.07
SS18-207ENST00000577636 ZNF788Q6ZQV5 615 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 LIAT1Q6ZQX7 453 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 TBC1D26Q86UD7 250 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 ZBTB34Q8NCN2 500 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 UNKLQ9H9P5 680 aaKnown RBP8.37□□□□□ -1.07
SS18-207ENST00000577636 OR2S2Q9NQN1 319 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 CCL28Q9NRJ3 127 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 ZFP57Q9NU63 452 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 OR1A1Q9P1Q5 309 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 GNG12Q9UBI6 72 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 HSPB11Q9Y547 144 aa8.37□□□□□ -1.07
SS18-207ENST00000577636 DBX1A6NMT0 343 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 CCSO14618 274 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 TFF1P04155 84 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 HOXB5P09067 269 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 OR5AC1P0C628 307 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 OR8U9P0C7N5 309 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 SRSF4Q08170 494 aaKnown RBP8.36□□□□□ -1.07
SS18-207ENST00000577636 SMCO1Q147U7 214 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 MSMO1Q15800 293 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms