RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ANKRD60Q9BZ19 345 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 IFI27L2Q9H2X8 130 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 RIMS4Q9H426 269 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-216ENST00000576241 KCNK15Q9H427 330 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 PLGRKTQ9HBL7 147 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 VSIG4Q9Y279 399 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 LSM2Q9Y333 95 aaKnown RBP10.68□□□□□ -0.7
CCDC40-216ENST00000576241 IGHV7-81A0A0B4J1V7 117 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 TMEM14DPA8MWL7 114 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 G3V318 75 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 ST8SIA5O15466 376 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 NAPSAO96009 420 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 OR8U8P0C7N1 319 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 PPIFP30405 207 aaKnown RBP10.67□□□□□ -0.7
CCDC40-216ENST00000576241 ECI1P42126 302 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 PLGLAQ15195 96 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 ZNF260Q3ZCT1 412 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 LIPKQ5VXJ0 399 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 ZNF880Q6PDB4 577 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 FAM131AQ6UXB0 335 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 NPBQ8NG41 125 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 OR1N2Q8NGR9 330 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 MYOZ3Q8TDC0 251 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 TMEM203Q969S6 136 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 KLK15Q9H2R5 256 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 SLC23A1Q9UHI7 598 aa10.67□□□□□ -0.7
CCDC40-216ENST00000576241 OR5H14A6NHG9 310 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 H7C2Y5 167 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 HSPA12AO43301 675 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 ARL6IP5O75915 188 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 NDUFA3O95167 84 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 IGLV1-40P01703 118 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 HSMCR30P0CW71 290 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 ARSBP15848 533 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 MC5RP33032 325 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 QRFPP83859 136 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 RUNX1Q01196 453 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 ZNF616Q08AN1 781 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 P2RY14Q15391 338 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 RPL39P5Q59GN2 51 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 ZNF491Q8N8L2 437 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 EDARADDQ8WWZ3 215 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 OR5B12Q96R08 314 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 GHITMQ9H3K2 345 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 GNB4Q9HAV0 340 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 MGAT4AQ9UM21 535 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 TPRKBQ9Y3C4 175 aa10.66□□□□□ -0.7
CCDC40-216ENST00000576241 STAB2Q8WWQ8 2551 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 I3L521 148 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 SLC17A2O00624 439 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 ITGB1BP1O14713 200 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 RRHO14718 337 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 SOCS1O15524 211 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 GSTP1P09211 210 aaKnown RBP10.65□□□□□ -0.7
CCDC40-216ENST00000576241 NHLRC4P0CG21 123 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-216ENST00000576241 CD37P11049 281 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 ZBTB25P24278 435 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 PSMA1P25786 263 aaKnown RBP10.65□□□□□ -0.7
CCDC40-216ENST00000576241 RAB9AP51151 201 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 INSL3P51460 131 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 IRF3Q14653 427 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 TRAM1Q15629 374 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 RAB11BQ15907 218 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 ECSCRQ19T08 205 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 ZNF660Q6AZW8 331 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-216ENST00000576241 MINDY2Q8NBR6 621 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 ABHD5Q8WTS1 349 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 PRR25Q96S07 402 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 LPAR5Q9H1C0 372 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 FBXL15Q9H469 300 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 C12orf4Q9NQ89 552 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 AK3Q9UIJ7 227 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 SCOCQ9UIL1 159 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 FOXA2Q9Y261 457 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-216ENST00000576241 WASHC3Q9Y3C0 194 aa10.65□□□□□ -0.7
CCDC40-216ENST00000576241 A0A0A6YYD4 124 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 TRBV6-6A0A0A6YYG2 114 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 A0A1W2PN81 502 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 ANKRD65E5RJM6 399 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 H0YJW9 148 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 RBBP9O75884 186 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 CT45A6P0DMU7 189 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 CT45A5P0DMU8 189 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 CT45A7P0DMV0 189 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 CHRNA7P36544 502 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 CEACAM6P40199 344 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 RANBP1P43487 201 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 GNB1P62873 340 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 CX3CL1P78423 397 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 HLA-DRB3P79483 266 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 KIAA0141Q14154 515 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-216ENST00000576241 CASC10Q5T4H9 136 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 GLDNQ6ZMI3 551 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-216ENST00000576241 TCTEX1D1Q8N7M0 179 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 ABHD14BQ96IU4 210 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 HDHD3Q9BSH5 251 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-216ENST00000576241 CCDC90BQ9GZT6 254 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 PARP12Q9H0J9 701 aaKnown RBP10.64□□□□□ -0.71
CCDC40-216ENST00000576241 OR1A1Q9P1Q5 309 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 RNF150Q9ULK6 438 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms