RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 RPS10P5Q9NQ39 176 aa8.46□□□□□ -1.05
VPS53-220ENST00000576149 A0A087X0M5 115 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 IGHV2OR16-5A0A0B4J2B6 119 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 IGHV1-18A0A0C4DH31 117 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 A0A1B0GX30 115 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 C7orf77A4D0Y5 90 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 RBFOX3A6NFN3 312 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 NDUFS6O75380 124 aaKnown RBP8.46□□□□□ -1.06
VPS53-220ENST00000576149 GCH1P30793 250 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 AKR1C3P42330 323 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 S100A12P80511 92 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 P2RY6Q15077 328 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 AKIRIN2Q53H80 203 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 AKR1C8PQ5T2L2 129 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 AVPI1Q5T686 147 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 DPPA3Q6W0C5 159 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 FGFRL1Q8N441 504 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 CLCC1Q96S66 551 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 OPN3Q9H1Y3 402 aaPredicted RBP8.46□□□□□ -1.06
VPS53-220ENST00000576149 MSL2Q9HCI7 577 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 COA4Q9NYJ1 87 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 PSENENQ9NZ42 101 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 KIAA1456Q9P272 454 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 FZR1Q9UM11 496 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 PROCRQ9UNN8 238 aa8.46□□□□□ -1.06
VPS53-220ENST00000576149 OR5H1A6NKK0 313 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 IFNL4K9M1U5 179 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 PTBP3O95758 552 aaKnown RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 IFNA5P01569 189 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 HBZP02008 142 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 IAPPP10997 89 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 IL2RGP31785 369 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 RAB13P51153 203 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 EIF4EBP1Q13541 118 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 BHLHA15Q7RTS1 189 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 C1orf174Q8IYL3 243 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 OR52L2PQ8NGH6 319 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 EGLN1Q9GZT9 426 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 SAV1Q9H4B6 383 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 UFSP2Q9NUQ7 469 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 IL19Q9UHD0 177 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 RNF150Q9ULK6 438 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 MMP24Q9Y5R2 645 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 URB1O60287 2271 aaKnown RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 CACNA1HO95180 2353 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 MBD3L4A6NDZ8 208 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 MBD3L3A6NE82 208 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 MBD3L5A6NJ08 208 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 ZNF891A8MT65 544 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 M0R036 132 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 OR13C7P0DN81 318 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 FOLR2P14207 255 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 GABRA2P47869 451 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 TLE4Q04727 773 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 ARL16Q0P5N6 197 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 SEM1Q6ZVN7 128 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 MBD3L2Q8NHZ7 208 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 C14orf79Q96F83 325 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 C5orf30Q96GV9 206 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 EAF1Q96JC9 268 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 ATP6V0BQ99437 205 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 OR2D2Q9H210 308 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 TUBA4BQ9H853 241 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 METRNQ9UJH8 293 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 KLF2Q9Y5W3 355 aaPredicted RBP8.45□□□□□ -1.06
VPS53-220ENST00000576149 LOC400499M0QZD8 3231 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 OTOGLQ3ZCN5 2332 aa8.45□□□□□ -1.06
VPS53-220ENST00000576149 FAM90A26D6RGX4 464 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 RAMP3O60896 148 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 TFF1P04155 84 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 METTL15P1P0C7V9 234 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 RPL30P62888 115 aaKnown RBP8.44□□□□□ -1.06
VPS53-220ENST00000576149 COL10A1Q03692 680 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 MSMO1Q15800 293 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 SMIM21Q3B7S5 101 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 FAM53AQ6NSI3 398 aaPredicted RBP8.44□□□□□ -1.06
VPS53-220ENST00000576149 HAPLN4Q86UW8 402 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 ZADH2Q8N4Q0 377 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 CD300LFQ8TDQ1 290 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 MRGPRDQ8TDS7 321 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 SFT2D1Q8WV19 159 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 C20orf24Q9BUV8 137 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 SLC25A15Q9Y619 301 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 CACNA1GO43497 2377 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 A0A0U1RQK1 487 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 ZNF320A2RRD8 509 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 GLIPR1P48060 266 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 UBE2KP61086 200 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 RHEBQ15382 184 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 ADIPOQQ15848 244 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 SOHLH1Q5JUK2 328 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 ZNF525Q8N782 197 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 PPP1R35Q8TAP8 253 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 RBMXL1Q96E39 390 aaKnown RBP8.44□□□□□ -1.06
VPS53-220ENST00000576149 LURAP1Q96LR2 239 aa8.44□□□□□ -1.06
VPS53-220ENST00000576149 ESRP2Q9H6T0 727 aaKnown RBP8.44□□□□□ -1.06
VPS53-220ENST00000576149 FRYQ5TBA9 3013 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 TRAV1-1A0A0B4J248 108 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 NDUFS8O00217 210 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 UBE2CO00762 179 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms