RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PAFAH1B3Q15102 231 aaKnown RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 UPP1Q16831 310 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TMEM97Q5BJF2 176 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 SLC25A30Q5SVS4 291 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 BVES-AS1Q5T3Y7 98 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 C12orf73Q69YU5 71 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 LEG1Q6P5S2 330 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ARL9Q6T311 187 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PAQR6Q6TCH4 344 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 OPN5Q6U736 354 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 DPPA3Q6W0C5 159 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 C12orf54Q6X4T0 127 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 DNM1P46Q6ZS02 220 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 Q6ZSR9 355 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 MOB1BQ7L9L4 216 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 NR2C2APQ86WQ0 139 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZNF547Q8IVP9 402 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZDHHC23Q8IYP9 409 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 OSR2Q8N2R0 312 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 LRRC25Q8N386 305 aaPredicted RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZADH2Q8N4Q0 377 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 LINC00471Q8N535 108 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 METTL27Q8N6F8 245 aaPredicted RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZNF611Q8N823 705 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 C8orf31Q8N9H6 132 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZIC4Q8N9L1 334 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZNF485Q8NCK3 441 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TMEM116Q8NCL8 245 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 OR4L1Q8NH43 312 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PPP1R1CQ8WVI7 109 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 NEUROG1Q92886 237 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PCED1BQ96HM7 432 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ADTRPQ96IZ2 230 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TSSK2Q96PF2 358 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 RAB40CQ96S21 281 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 NIPSNAP3BQ9BS92 247 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ABHD6Q9BV23 337 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 C19orf24Q9BVV8 132 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 HCAR1Q9BXC0 346 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GPR174Q9BXC1 333 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PECRQ9BY49 303 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 DPY30Q9C005 99 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 MAP1LC3BQ9GZQ8 125 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PARLQ9H300 379 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 OR51I1Q9H343 314 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 RHOJQ9H4E5 214 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 POPDC3Q9HBV1 291 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ENY2Q9NPA8 101 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 UBE2TQ9NPD8 197 aaPredicted RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 WSB2Q9NYS7 404 aaPredicted RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 OR1A1Q9P1Q5 309 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 DHDHQ9UQ10 334 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 SCML2Q9UQR0 700 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PIGLQ9Y2B2 252 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TECPR2O15040 1411 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ANKRD36A6QL64 1941 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 MYLKQ15746 1914 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 RALGAPA2Q2PPJ7 1873 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PLXNA1Q9UIW2 1896 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 SHROOM3Q8TF72 1996 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 TICRRQ7Z2Z1 1910 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 TRBV5-7A0A0A0MS05 114 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 KBTBD11-OT1A0A1B0GTJ5 212 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 C7orf71A4D174 169 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR51F1A6NGY5 319 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SHISA7A6NL88 538 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR4C45A6NMZ5 311 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 CD300LBA8K4G0 201 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 H0YL77 283 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 TNFSF11O14788 317 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 KLK10O43240 276 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 TIMM8AO60220 97 aaPredicted RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 NPIPB7O75200 414 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SOX14O95416 240 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 CYB5AP00167 134 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 MOSP00540 346 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 HLA-HP01893 362 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 DBIP07108 87 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 SRP19P09132 144 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 TACSTD2P09758 323 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SEC11BP0C7V7 166 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 DANCRP0C864 163 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 LINC00869P0C866 280 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 ZNF728P0DKX0 622 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 ACP5P13686 325 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 HIST1H1CP16403 213 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 PMCHP20382 165 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 TIA1P31483 386 aaKnown RBP eCLIP2.72□□□□□ -1.97
VPS35-208ENST00000568612 SRP14P37108 136 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 PNPLA4P41247 253 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 TSFMP43897 325 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 PGFP49763 221 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 VAMP7P51809 220 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 RAB10P61026 200 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 UBE2MP61081 183 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 LCN6P62502 163 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SEC11AP67812 179 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 HLA-DRB3P79483 266 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SSBP1Q04837 148 aaKnown RBP2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms