RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZNF880Q6PDB4 577 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 CEACAM19Q7Z692 300 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 SVOPQ8N4V2 548 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 MINDY2Q8NBR6 621 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 OR1N2Q8NGR9 330 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 KCNK15Q9H427 330 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 PLEKHJ1Q9NW61 149 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 KIAA1456Q9P272 454 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 LSM2Q9Y333 95 aaKnown RBP12.5□□□□□ -0.41
CLN3-229ENST00000567963 TMEM14DPA8MWL7 114 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 RAB29O14966 203 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 ST8SIA5O15466 376 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 OR8U8P0C7N1 319 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 BLVRBP30043 206 aaPredicted RBP12.49□□□□□ -0.41
CLN3-229ENST00000567963 ZNF616Q08AN1 781 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 HSD17B12Q53GQ0 312 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 ASPHD1Q5U4P2 390 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 OR5B12Q96R08 314 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 CHMP1AQ9HD42 196 aaPredicted RBP12.49□□□□□ -0.41
CLN3-229ENST00000567963 SLC23A1Q9UHI7 598 aa12.49□□□□□ -0.41
CLN3-229ENST00000567963 A0A0A6YYD4 124 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 UCHL1P09936 223 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 CT45A6P0DMU7 189 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 CT45A5P0DMU8 189 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 CT45A7P0DMV0 189 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 INSL3P51460 131 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 GNB1P62873 340 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 MED22Q15528 200 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 RPL39P5Q59GN2 51 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 AGMATQ9BSE5 352 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 GHITMQ9H3K2 345 aa12.48□□□□□ -0.41
CLN3-229ENST00000567963 ZNF256Q9Y2P7 627 aaPredicted RBP12.48□□□□□ -0.41
CLN3-229ENST00000567963 BPNT1O95861 308 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 CRIP2P52943 208 aaPredicted RBP12.47□□□□□ -0.41
CLN3-229ENST00000567963 NDPQ00604 133 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 C19orf54Q5BKX5 351 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 ZNF660Q6AZW8 331 aaPredicted RBP12.47□□□□□ -0.41
CLN3-229ENST00000567963 FAM131AQ6UXB0 335 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 OR6M1Q8NGM8 313 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 SETD6Q8TBK2 473 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 PARP12Q9H0J9 701 aaKnown RBP12.47□□□□□ -0.41
CLN3-229ENST00000567963 LPAR5Q9H1C0 372 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 VCXQ9H320 206 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 RIMS4Q9H426 269 aaPredicted RBP12.47□□□□□ -0.41
CLN3-229ENST00000567963 FBXL15Q9H469 300 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 FBXO7Q9Y3I1 522 aa12.47□□□□□ -0.41
CLN3-229ENST00000567963 TRBV6-6A0A0A6YYG2 114 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 OR5H14A6NHG9 310 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 ITGB1BP1O14713 200 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 RRHO14718 337 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 SOCS1O15524 211 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 SOX15O60248 233 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 MC5RP33032 325 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 CX3CL1P78423 397 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 LIPKQ5VXJ0 399 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 GLDNQ6ZMI3 551 aaPredicted RBP12.46□□□□□ -0.41
CLN3-229ENST00000567963 MOB1BQ7L9L4 216 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 FAM89BQ8N5H3 189 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 NRG4Q8WWG1 115 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 TMEM203Q969S6 136 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 ABHD14BQ96IU4 210 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 SCN3BQ9NY72 215 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 AK3Q9UIJ7 227 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 NUBP2Q9Y5Y2 271 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 U3KQK5 164 aa12.46□□□□□ -0.41
CLN3-229ENST00000567963 A0A1W2PN81 502 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 H0YJW9 148 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 FCN1O00602 326 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 EGR2P11161 476 aaPredicted RBP12.46□□□□□ -0.42
CLN3-229ENST00000567963 ARSBP15848 533 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 ZBTB25P24278 435 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 CHRNA7P36544 502 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 CEACAM6P40199 344 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 IRF3Q14653 427 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 ECSCRQ19T08 205 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 ZNF429Q86V71 674 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 OR5AN1Q8NGI8 311 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 DCUN1D4Q92564 292 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 UFD1Q92890 307 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 GFI1Q99684 422 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 RNF5Q99942 180 aa12.46□□□□□ -0.42
CLN3-229ENST00000567963 HDHD3Q9BSH5 251 aaPredicted RBP12.46□□□□□ -0.42
CLN3-229ENST00000567963 URM1Q9BTM9 101 aaKnown RBP12.46□□□□□ -0.42
CLN3-229ENST00000567963 ALX4Q9H161 411 aaPredicted RBP12.46□□□□□ -0.42
CLN3-229ENST00000567963 RYR3Q15413 4870 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 OVOL1O14753 267 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 GSTP1P09211 210 aaKnown RBP12.45□□□□□ -0.42
CLN3-229ENST00000567963 TMEM267Q0VDI3 215 aaPredicted RBP12.45□□□□□ -0.42
CLN3-229ENST00000567963 PLGLAQ15195 96 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 TMEM91Q6ZNR0 172 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 TCTEX1D1Q8N7M0 179 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 EDARADDQ8WWZ3 215 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 TOLLIPQ9H0E2 274 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 C11orf54Q9H0W9 315 aaPredicted RBP12.45□□□□□ -0.42
CLN3-229ENST00000567963 OR1A1Q9P1Q5 309 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 HSF4Q9ULV5 492 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 MGAT4AQ9UM21 535 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 FOXA2Q9Y261 457 aaPredicted RBP12.45□□□□□ -0.42
CLN3-229ENST00000567963 WASHC3Q9Y3C0 194 aa12.45□□□□□ -0.42
CLN3-229ENST00000567963 FOXI3A8MTJ6 420 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms