RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 WFDC9Q8NEX5 89 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 OR10R2Q8NGX6 335 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 PHF21AQ96BD5 680 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 NOL4LQ96MY1 436 aaPredicted RBP14.78□□□□□ -0.04
CLN3-227ENST00000567495 MRPL20Q9BYC9 149 aaKnown RBP14.78□□□□□ -0.04
CLN3-227ENST00000567495 TXNL4BQ9NX01 149 aaKnown RBP14.78□□□□□ -0.04
CLN3-227ENST00000567495 RRP15Q9Y3B9 282 aaKnown RBP14.78□□□□□ -0.04
CLN3-227ENST00000567495 RAB27BO00194 218 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 DIRAS3O95661 229 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 OR3A3P47888 321 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 KIR2DS1Q14954 304 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 MMDQ15546 238 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 KPRPQ5T749 579 aaPredicted RBP14.77□□□□□ -0.05
CLN3-227ENST00000567495 SAMD5Q5TGI4 173 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 OR4A4PQ8NGN8 299 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 ZNF251Q9BRH9 671 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 AGMATQ9BSE5 352 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 ZNF580Q9UK33 172 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 KCNK7Q9Y2U2 307 aa14.77□□□□□ -0.05
CLN3-227ENST00000567495 ST8SIA5O15466 376 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 PF4P02776 101 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 SCTP09683 121 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 HIST1H1DP16402 221 aaKnown RBP14.76□□□□□ -0.05
CLN3-227ENST00000567495 MC5RP33032 325 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 F2RL1P55085 397 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 ACTBP60709 375 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 PNLIPRP3Q17RR3 467 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 TEX38Q6PEX7 206 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 C10orf99Q6UWK7 81 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 KCTD7Q96MP8 289 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 CHCHD6Q9BRQ6 235 aa14.76□□□□□ -0.05
CLN3-227ENST00000567495 OR5H14A6NHG9 310 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 MFNGO00587 321 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 FABP7O15540 132 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 SCGNO76038 276 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 OR5H8P0DN80 308 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 PLA2G7Q13093 441 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 NR2C2APQ86WQ0 139 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 C1QL4Q86Z23 238 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 C11orf54Q9H0W9 315 aaPredicted RBP14.75□□□□□ -0.05
CLN3-227ENST00000567495 OR1A1Q9P1Q5 309 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 ZNF221Q9UK13 617 aa14.75□□□□□ -0.05
CLN3-227ENST00000567495 CMYA5Q8N3K9 4069 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 G3V4G9 280 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 RBBP9O75884 186 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 IGF1P05019 195 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 FCGR3AP08637 254 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 CD33P20138 364 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 TALDO1P37837 337 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 RPL23AP62750 156 aaKnown RBP14.74□□□□□ -0.05
CLN3-227ENST00000567495 SRSF7Q16629 238 aaKnown RBP eCLIP14.74□□□□□ -0.05
CLN3-227ENST00000567495 BEAN1Q3B7T3 259 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 MOGAT2Q3SYC2 334 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 NPBQ8NG41 125 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 RNF5Q99942 180 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 TOLLIPQ9H0E2 274 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 PARP12Q9H0J9 701 aaKnown RBP14.74□□□□□ -0.05
CLN3-227ENST00000567495 KIAA1456Q9P272 454 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 ZNF107Q9UII5 783 aaPredicted RBP14.74□□□□□ -0.05
CLN3-227ENST00000567495 LINC00527Q9UJ94 153 aa14.74□□□□□ -0.05
CLN3-227ENST00000567495 LINC01548A6NM66 108 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 NBR2O15453 112 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 HLA-DRB1P01911 266 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 ELANEP08246 267 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 CT45A6P0DMU7 189 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 CT45A5P0DMU8 189 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 CT45A7P0DMV0 189 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 GNB3P16520 340 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 VDAC1P21796 283 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 SCAND1P57086 179 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 FOXE3Q13461 319 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 ARFRP1Q13795 201 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 RPL39P5Q59GN2 51 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 Q6ZS49 121 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 REC114Q7Z4M0 266 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.73□□□□□ -0.05
CLN3-227ENST00000567495 OR5AN1Q8NGI8 311 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 ABHD14BQ96IU4 210 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 ATG5Q9H1Y0 275 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.73□□□□□ -0.05
CLN3-227ENST00000567495 RDH8Q9NYR8 311 aa14.73□□□□□ -0.05
CLN3-227ENST00000567495 A0A0B4J203 849 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 IGKV1-6A0A0C4DH72 117 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 H0YJW9 148 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 DUS4LO95620 317 aaKnown RBP14.72□□□□□ -0.05
CLN3-227ENST00000567495 SLC2A2P11168 524 aaPredicted RBP14.72□□□□□ -0.05
CLN3-227ENST00000567495 C5orf64Q2M2E5 130 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 CXorf66Q5JRM2 361 aaPredicted RBP14.72□□□□□ -0.05
CLN3-227ENST00000567495 LIN54Q6MZP7 749 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 SFXN4Q6P4A7 337 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 FAM131AQ6UXB0 335 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 RNF152Q8N8N0 203 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 OR10J5Q8NHC4 309 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 CABLES2Q9BTV7 478 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 OR51E2Q9H255 320 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 VCX3AQ9NNX9 186 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 DAPK2Q9UIK4 370 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 WASHC3Q9Y3C0 194 aa14.72□□□□□ -0.05
CLN3-227ENST00000567495 A0A075B6Q4 140 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 TMEM127O75204 238 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms