RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CT45A6P0DMU7 189 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 CT45A5P0DMU8 189 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 CT45A7P0DMV0 189 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 SNRPBP14678 240 aaKnown RBP13.01□□□□□ -0.33
CLN3-211ENST00000564091 CELP19835 753 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 INSL4Q14641 139 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 HMGN3Q15651 99 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 LY6G6FQ5SQ64 297 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 ZNF660Q6AZW8 331 aaPredicted RBP13.01□□□□□ -0.33
CLN3-211ENST00000564091 ABHD5Q8WTS1 349 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 NEDD4LQ96PU5 975 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 UQCC2Q9BRT2 126 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 FAM103A1Q9BTL3 118 aaKnown RBP13.01□□□□□ -0.33
CLN3-211ENST00000564091 PARP12Q9H0J9 701 aaKnown RBP13.01□□□□□ -0.33
CLN3-211ENST00000564091 CST11Q9H112 138 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 SORL1Q92673 2214 aa13.01□□□□□ -0.33
CLN3-211ENST00000564091 RRHO14718 337 aa13□□□□□ -0.33
CLN3-211ENST00000564091 TAS2R43P59537 309 aa13□□□□□ -0.33
CLN3-211ENST00000564091 PLGLAQ15195 96 aa13□□□□□ -0.33
CLN3-211ENST00000564091 ACSM6Q6P461 480 aa13□□□□□ -0.33
CLN3-211ENST00000564091 C6orf201Q7Z4U5 140 aa13□□□□□ -0.33
CLN3-211ENST00000564091 HAPLN4Q86UW8 402 aa13□□□□□ -0.33
CLN3-211ENST00000564091 NKAIN3Q8N8D7 197 aa13□□□□□ -0.33
CLN3-211ENST00000564091 MS4A10Q96PG2 267 aa13□□□□□ -0.33
CLN3-211ENST00000564091 CLCC1Q96S66 551 aa13□□□□□ -0.33
CLN3-211ENST00000564091 GHITMQ9H3K2 345 aa13□□□□□ -0.33
CLN3-211ENST00000564091 ABRACLQ9P1F3 81 aa13□□□□□ -0.33
CLN3-211ENST00000564091 GHRLQ9UBU3 117 aa13□□□□□ -0.33
CLN3-211ENST00000564091 STEAP1Q9UHE8 339 aa13□□□□□ -0.33
CLN3-211ENST00000564091 GAB2Q9UQC2 676 aa13□□□□□ -0.33
CLN3-211ENST00000564091 LRRC42Q9Y546 428 aa13□□□□□ -0.33
CLN3-211ENST00000564091 NUBP2Q9Y5Y2 271 aa13□□□□□ -0.33
CLN3-211ENST00000564091 RAB29O14966 203 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 GSTP1P09211 210 aaKnown RBP12.99□□□□□ -0.33
CLN3-211ENST00000564091 HTR2CP28335 458 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 CRIP2P52943 208 aaPredicted RBP12.99□□□□□ -0.33
CLN3-211ENST00000564091 SRSF7Q16629 238 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLN3-211ENST00000564091 TTC23Q5W5X9 447 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 SVOPQ8N4V2 548 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 OR6Q1Q8NGQ2 317 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 SETD6Q8TBK2 473 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 ABHD14BQ96IU4 210 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 KCNK15Q9H427 330 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 PIPOXQ9P0Z9 390 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 SLC23A1Q9UHI7 598 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 LYSTQ99698 3801 aa12.99□□□□□ -0.33
CLN3-211ENST00000564091 EFCAB10A6NFE3 127 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 H0YJW9 148 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 HSPB1P04792 205 aaKnown RBP12.98□□□□□ -0.33
CLN3-211ENST00000564091 OR8U9P0C7N5 309 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 LYL1P12980 280 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 RPS27AP62979 156 aaKnown RBP12.98□□□□□ -0.33
CLN3-211ENST00000564091 ACTBL2Q562R1 376 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 LAIR2Q6ISS4 152 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 FAM71F2Q6NXP2 309 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 UNQ5815/PRO19632Q6UWF5 114 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 PPP1R27Q86WC6 154 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 TCTEX1D1Q8N7M0 179 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 SETD9Q8NE22 299 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 NICN1Q9BSH3 213 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 ZMAT4Q9H898 229 aa12.98□□□□□ -0.33
CLN3-211ENST00000564091 CHMP1AQ9HD42 196 aaPredicted RBP12.98□□□□□ -0.33
CLN3-211ENST00000564091 H7C2Y5 167 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 CD1AP06126 327 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 WNT4P56705 351 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 TPPP2P59282 170 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 PITPNAQ00169 270 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 TMEM267Q0VDI3 215 aaPredicted RBP12.97□□□□□ -0.33
CLN3-211ENST00000564091 CD200R1LQ6Q8B3 271 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 LFNGQ8NES3 379 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 RHOVQ96L33 236 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 OR4C12Q96R67 309 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 TMEM59Q9BXS4 323 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 PALMDQ9NP74 551 aa12.97□□□□□ -0.33
CLN3-211ENST00000564091 CNOT2Q9NZN8 540 aaKnown RBP12.97□□□□□ -0.33
CLN3-211ENST00000564091 OR5H14A6NHG9 310 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 MYL12BO14950 172 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 NAPSAO96009 420 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 UBBP0CG47 229 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 MAPK3P27361 379 aaPredicted RBP12.96□□□□□ -0.33
CLN3-211ENST00000564091 MC5RP33032 325 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 LINC00205P59089 165 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 UNC119Q13432 240 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 ACSM3Q53FZ2 586 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 ZFAND6Q6FIF0 208 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 ZNF880Q6PDB4 577 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 AHSA2Q719I0 299 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 LRRTM1Q86UE6 522 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 DHRSXQ8N5I4 330 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 DRAXINQ8NBI3 349 aaPredicted RBP12.96□□□□□ -0.33
CLN3-211ENST00000564091 OR5AN1Q8NGI8 311 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 FLYWCH2Q96CP2 140 aaKnown RBP12.96□□□□□ -0.33
CLN3-211ENST00000564091 OR1A1Q9P1Q5 309 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 METTL1Q9UBP6 276 aaKnown RBP12.96□□□□□ -0.33
CLN3-211ENST00000564091 PSORS1C1Q9UIG5 152 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 RNF150Q9ULK6 438 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 WASHC3Q9Y3C0 194 aa12.96□□□□□ -0.33
CLN3-211ENST00000564091 CSMD3Q7Z407 3707 aa12.96□□□□□ -0.34
CLN3-211ENST00000564091 A0A0A6YYD4 124 aa12.95□□□□□ -0.34
CLN3-211ENST00000564091 CA2P00918 260 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms