RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 YTHDF1Q9BYJ9 559 aaKnown RBP4.04□□□□□ -1.76
VPS35P1-201ENST00000563400 TBL1XR1Q9BZK7 514 aa4.04□□□□□ -1.76
VPS35P1-201ENST00000563400 SELENOIQ9C0D9 397 aa4.04□□□□□ -1.76
VPS35P1-201ENST00000563400 CXorf21Q9HAI6 301 aa4.04□□□□□ -1.76
VPS35P1-201ENST00000563400 XCL2Q9UBD3 114 aa4.04□□□□□ -1.76
VPS35P1-201ENST00000563400 PRO0628Q9UI54 55 aa4.04□□□□□ -1.76
VPS35P1-201ENST00000563400 TRAPPC4Q9Y296 219 aa4.04□□□□□ -1.76
VPS35P1-201ENST00000563400 MUC3AQ02505 3323 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 A0A087WUJ7 227 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 A0A1W2PP18 115 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 RBFOX3A6NFN3 312 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 ZNF860A6NHJ4 632 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 FOXI3A8MTJ6 420 aaPredicted RBP4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 XKRYO14609 159 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 REM1O75628 298 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 FAM107AO95990 144 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 GTF2F2P13984 249 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 DAOP14920 347 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 PRKACGP22612 351 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 MTPNP58546 118 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 SRPXP78539 464 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 IFITM2Q01629 132 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 PLGLB1Q02325 96 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 ZNF45Q02386 682 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 PLCXD2Q0VAA5 305 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 TGIF1Q15583 401 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 MICAQ29983 383 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 ZNF630Q2M218 657 aaPredicted RBP4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 ARHGAP11BQ3KRB8 267 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 HES5Q5TA89 166 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 OR10K2Q6IF99 312 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 C11orf71Q6IPW1 123 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 SFXN4Q6P4A7 337 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 SSX8Q7RTT4 187 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 CDC20BQ86Y33 519 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 COX18Q8N8Q8 333 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 OR10G3Q8NGC4 313 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 OR9G1Q8NH87 305 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 UCN3Q969E3 161 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 SFRP2Q96HF1 295 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 IMMP1LQ96LU5 166 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 FAAP24Q9BTP7 215 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 TRIM15Q9C019 465 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 VSIRQ9H7M9 311 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 UBQLN4Q9NRR5 601 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 ARMC1Q9NVT9 282 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 AIG1Q9NVV5 245 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 MARCOQ9UEW3 520 aaPredicted RBP4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 PAIP2BQ9ULR5 123 aaKnown RBP4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 SLC35A3Q9Y2D2 325 aa4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 TP53BP1Q12888 1972 aaPredicted RBP4.03□□□□□ -1.76
VPS35P1-201ENST00000563400 SEC16AO15027 2179 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 IGHV3OR16-13A0A075B7E8 117 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 IGKV3D-11A0A0A0MRZ8 115 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 A0A0G2JN53 185 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 RPL37AP8A6NKH3 93 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 FAM220BPB1ANY3 271 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 C15orf65H3BRN8 121 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 UBFD1O14562 309 aaKnown RBP4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 NDUFA2O43678 99 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 CPSF4O95639 269 aaKnown RBP4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 ESDP10768 282 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 LAMP1P11279 417 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 COX6A1P12074 109 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 CD99P14209 185 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 GABRA1P14867 456 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 DIO3P55073 304 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 TAS2R43P59537 309 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 NCALDP61601 193 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 SELENOTP62341 195 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 KIAA0040Q15053 153 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 RSU1Q15404 277 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 LIN52Q52LA3 116 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 TMEM97Q5BJF2 176 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 PAGE3Q5JUK9 113 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 RUSC1-AS1Q66K80 236 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 LCN12Q6JVE5 192 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 C5orf46Q6UWT4 87 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 ZNF550Q7Z398 422 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 DHFR2Q86XF0 187 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 TMEM86BQ8N661 226 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 WDSUB1Q8N9V3 476 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 C11orf72Q8NBR9 251 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 OR1J4Q8NGS1 313 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 OR10J6PQ8NGY7 276 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 NEIL3Q8TAT5 605 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 SRSF12Q8WXF0 261 aaKnown RBP4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 RDH5Q92781 318 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 TAF15Q92804 592 aaKnown RBP eCLIP4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 ZHX1-C8orf76Q96EF9 292 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 SMIM12Q96EX1 92 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 RNF185Q96GF1 192 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 FCRL1Q96LA6 429 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 RDH12Q96NR8 316 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 ZNF2Q9BSG1 426 aaPredicted RBP4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 DOHHQ9BU89 302 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 EMC6Q9BV81 110 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 EBPLQ9BY08 206 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 CCDC167Q9P0B6 97 aa4.02□□□□□ -1.77
VPS35P1-201ENST00000563400 ZNF225Q9UK10 706 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms