RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CLEC9AQ6UXN8 241 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 IL34Q6ZMJ4 242 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 C20orf204Q6ZNR8 217 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 ADTRPQ96IZ2 230 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 PRORYQ9H606 182 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 SLC39A9Q9NUM3 307 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 LPAR3Q9UBY5 353 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 CRYM-AS1A6NIL9 109 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 LEUTXA8MZ59 168 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 FAM106CPP0CH98 169 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 F2RP25116 425 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 DHODHQ02127 395 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 SCGB2A2Q13296 93 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 ZNF260Q3ZCT1 412 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 POC1AQ8NBT0 407 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 OR1S2Q8NGQ3 325 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 RPS4Y2Q8TD47 263 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 CMTM3Q96MX0 182 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 HSD17B10Q99714 261 aaKnown RBP7.78□□□□□ -1.16
VPS39-205ENST00000562258 ZNF436Q9C0F3 470 aaPredicted RBP7.78□□□□□ -1.16
VPS39-205ENST00000562258 ANKRD20A5PA0PJZ0 165 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 ETV2O00321 342 aaPredicted RBP7.77□□□□□ -1.17
VPS39-205ENST00000562258 IGHV3-48P01763 117 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 SNRPCP09234 159 aaKnown RBP7.77□□□□□ -1.17
VPS39-205ENST00000562258 CT45A6P0DMU7 189 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 CT45A5P0DMU8 189 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 CT45A7P0DMV0 189 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 TPT1P13693 172 aaKnown RBP7.77□□□□□ -1.17
VPS39-205ENST00000562258 COX5AP20674 150 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 USF1P22415 310 aaPredicted RBP7.77□□□□□ -1.17
VPS39-205ENST00000562258 ADORA2A-AS1P86434 159 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 TMEM267Q0VDI3 215 aaPredicted RBP7.77□□□□□ -1.17
VPS39-205ENST00000562258 RPL39P5Q59GN2 51 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 CT45A1Q5HYN5 189 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 Q5PR19 223 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 LYZL2Q7Z4W2 148 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 HOGA1Q86XE5 327 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 CT45A3Q8NHU0 189 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 TMEM14DPA8MWL7 114 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 PGA5P0DJD9 388 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 NQO2P16083 231 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 SSBP1Q04837 148 aaKnown RBP7.77□□□□□ -1.17
VPS39-205ENST00000562258 HIST3H3Q16695 136 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 GGNBP1Q5YKI7 109 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 SEZ6L2Q6UXD5 910 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 VSTM2AQ8TAG5 236 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 HS3ST6Q96QI5 342 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 DOK5Q9P104 306 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 TIMM8BQ9Y5J9 83 aaPredicted RBP7.77□□□□□ -1.17
VPS39-205ENST00000562258 POMT1Q9Y6A1 747 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 IGKV1-12A0A0C4DH73 117 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 A0A0G2JK05 382 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 PCP4L1A6NKN8 68 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 MLNRO43193 412 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 IGKV1D-12P01611 117 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 C1QTNF12Q5T7M4 302 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 ETV3LQ6ZN32 361 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 GCSAMQ8N6F7 178 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 WDFY2Q96P53 400 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 ZNF835Q9Y2P0 537 aa7.77□□□□□ -1.17
VPS39-205ENST00000562258 PQLC2LA1A4F0 135 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 HMGB3O15347 200 aaKnown RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 OR7C2O60412 319 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 LY86O95711 162 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 CD1AP06126 327 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 SOD3P08294 240 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 PAX6P26367 422 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 C11orf91Q3C1V1 193 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 PLAC9Q5JTB6 97 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 NCR3LG1Q68D85 454 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 CLEC18BQ6UXF7 455 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 LINC00596Q86U02 117 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 ADAD2Q8NCV1 583 aaKnown RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 RBPMSQ93062 196 aaKnown RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 C2orf50Q96LR7 162 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 SLC25A22Q9H936 323 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 Q9N2K0 584 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 PNRC2Q9NPJ4 139 aaKnown RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 HELZ2Q9BYK8 2649 aaKnown RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 ARPC4-TTLL3A0A0A6YYG9 625 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 C10orf142B7Z368 130 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 RPL12P30050 165 aaKnown RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 DLX1P56177 255 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 TMEM50BP56557 158 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 ZNF79Q15937 498 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 ASPHD2Q6ICH7 369 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 LINC00299Q6ZSB3 139 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 SEM1Q6ZVN7 128 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 C5orf24Q7Z6I8 188 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 CADM3Q8N126 398 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 OR10A7Q8NGE5 316 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 SEBOXQ9HB31 216 aaPredicted RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 THYN1Q9P016 225 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 METTL1Q9UBP6 276 aaKnown RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 METRNQ9UJH8 293 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 WSB1Q9Y6I7 421 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 F8P00451 2351 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 LCN15Q6UWW0 184 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 OR10Z1Q8NGY1 313 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 PLPPR1Q8TBJ4 325 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms