RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	TTC33	Q6PID6	262 aa	Predicted RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	RASL11A	Q6T310	242 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	DRAM2	Q6UX65	266 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	SLC13A5	Q86YT5	568 aa	Predicted RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	ZBTB8OS	Q8IWT0	167 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	MSRB3	Q8IXL7	192 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	BOD1L2	Q8IYS8	172 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	RIBC1	Q8N443	379 aa	Predicted RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	OR11H1	Q8NG94	326 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	OR4K13	Q8NH42	304 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	ERMN	Q8TAM6	284 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	FNDC9	Q8TBE3	224 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	C16orf78	Q8WTQ4	265 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	CCDC12	Q8WUD4	166 aa	Predicted RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	DNAJB3	Q8WWF6	145 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	TMBIM1	Q969X1	311 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	PPCDC	Q96CD2	204 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	SMIM12	Q96EX1	92 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	CPNE2	Q96FN4	548 aa	Predicted RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	ABHD14B	Q96IU4	210 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	CAPZA3	Q96KX2	299 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	CFAP53	Q96M91	514 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	PACRG	Q96M98	296 aa	Predicted RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	MBOAT7	Q96N66	472 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	TRNT1	Q96Q11	434 aa	Known RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	RBP7	Q96R05	134 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	OR7D2	Q96RA2	312 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	GPR22	Q99680	433 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	EBNA1BP2	Q99848	306 aa	Known RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	ZNF251	Q9BRH9	671 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	TTTY12	Q9BZ98	90 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	BCL2L14	Q9BZR8	327 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	SLC22A4	Q9H015	551 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	MED28	Q9H204	178 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	CHMP4B	Q9H444	224 aa	Known RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	SPACA1	Q9HBV2	294 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	TMEM106B	Q9NUM4	274 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	TXNL4B	Q9NX01	149 aa	Known RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	EURL	Q9NYK6	297 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	GLS2	Q9UI32	602 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	HHLA2	Q9UM44	414 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	KLK5	Q9Y337	293 aa	Predicted RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	PUS1	Q9Y606	427 aa	Known RBP eCLIP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	ALG5	Q9Y673	324 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	GMEB1	Q9Y692	573 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	MINOS1-NBL1	R4GNA1	71 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	ATAD5	Q96QE3	1844 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	FBN2	P35556	2912 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	LRPPRC	P42704	1394 aa	Known RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	RP1L1	Q8IWN7	2480 aa	Predicted RBP	0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	OTOF	Q9HC10	1997 aa		0.28	□□□□□ -2.36
SPG11-222	ENST00000560435	ADAMTS7	Q9UKP4	1686 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	MYO5B	Q9ULV0	1848 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	PLXNA3	P51805	1871 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TRPM6	Q9BX84	2022 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A0G2JQZ4	141 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TEX50	A0A1B0GTY4	177 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TINCR	A0A1B0GVN0	87 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	DAPL1	A0PJW8	107 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	GRIFIN	A4D1Z8	144 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	LINC00862	A6NCI5	91 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM235	A6NFC5	223 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	GOLGA6L10	A6NI86	522 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	METTL15	A6NJ78	407 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TRPC5OS	A6NMA1	111 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	OR5K4	A6NMS3	321 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SMLR1	H3BR10	107 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435		K7EQS6	105 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435		M0QYV0	167 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CCRL2	O00421	344 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC17A3	O00476	420 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	COPE	O14579	308 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ITGB1BP1	O14713	200 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	AZIN1	O14977	448 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ATP8B1	O43520	1251 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ADAP1	O75689	374 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CRTAP	O75718	401 aa	Predicted RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ARL6IP5	O75915	188 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CDK14	O94921	469 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SOD1	P00441	154 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	HBZ	P02008	142 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ATP5G1	P05496	136 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	OR4A8	P0C604	315 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	LINC00614	P0C842	121 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF728	P0DKX0	622 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435		P0DMU3	169 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	FAM231A	P0DMU4	169 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	FAM231C	P0DMU5	169 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	OR13C7	P0DN81	318 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ESD	P10768	282 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CPM	P14384	443 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC25A16	P16260	332 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CD36	P16671	472 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ORM2	P19652	201 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	PVALB	P20472	110 aa	Predicted RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	OR10J1	P30954	320 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	GABRA3	P34903	492 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	RCVRN	P35243	200 aa		0.27	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms