RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 RAB11BQ15907 218 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 LIPKQ5VXJ0 399 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 ZNF660Q6AZW8 331 aaPredicted RBP9.84□□□□□ -0.83
SNX1-209ENST00000559961 OR10K2Q6IF99 312 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 PYHIN1Q6K0P9 492 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 TCTEX1D1Q8N7M0 179 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 FBLIM1Q8WUP2 373 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 TMEM203Q969S6 136 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 WWC2-AS2Q96NR7 200 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 RNF5Q99942 180 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 TM2D1Q9BX74 207 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 FKBP14Q9NWM8 211 aa9.84□□□□□ -0.83
SNX1-209ENST00000559961 SLC22A1O15245 554 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 ATP6V0E1O15342 81 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 ST8SIA5O15466 376 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 RGS10O43665 173 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 APOA2P02652 100 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 UCHL1P09936 223 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 CPEP16870 476 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 RAB9AP51151 201 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 LUMP51884 338 aaPredicted RBP9.83□□□□□ -0.84
SNX1-209ENST00000559961 CFHR3Q02985 330 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 ECSCRQ19T08 205 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 FAM131AQ6UXB0 335 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 LRRTM1Q86UE6 522 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 ZNF429Q86V71 674 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 LYPD6Q86Y78 171 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 ZNF491Q8N8L2 437 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 NPBQ8NG41 125 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 OR56B1Q8NGI3 324 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 OR5B12Q96R08 314 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 TSNAXQ99598 290 aaKnown RBP9.83□□□□□ -0.84
SNX1-209ENST00000559961 FOXA2Q9Y261 457 aaPredicted RBP9.83□□□□□ -0.84
SNX1-209ENST00000559961 WASHC3Q9Y3C0 194 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 A3GALT2U3KPV4 340 aa9.83□□□□□ -0.84
SNX1-209ENST00000559961 A0A1W2PN81 502 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 TMEM14DPA8MWL7 114 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 G3V318 75 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 ITGB1BP1O14713 200 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 RRHO14718 337 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 CHRNA7P36544 502 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 RPS16P62249 146 aaKnown RBP9.82□□□□□ -0.84
SNX1-209ENST00000559961 INSL4Q14641 139 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 P2RY14Q15391 338 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 SVOPQ8N4V2 548 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 CMSS1Q9BQ75 279 aaKnown RBP9.82□□□□□ -0.84
SNX1-209ENST00000559961 CENPOQ9BU64 300 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 C12orf4Q9NQ89 552 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 HSF4Q9ULV5 492 aa9.82□□□□□ -0.84
SNX1-209ENST00000559961 ZNF256Q9Y2P7 627 aaPredicted RBP9.82□□□□□ -0.84
SNX1-209ENST00000559961 IGHV7-81A0A0B4J1V7 117 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 LINC01619G3V211 115 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 SLC17A2O00624 439 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 PDCD5O14737 125 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 OVOL1O14753 267 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 ARPC1BO15143 372 aaKnown RBP9.81□□□□□ -0.84
SNX1-209ENST00000559961 NAPSAO96009 420 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 CD3GP09693 182 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 GADD45AP24522 165 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 CNTFRP26992 372 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 SERPINB10P48595 397 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 VEGFCP49767 419 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 HLA-DRB3P79483 266 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 RUNX1Q01196 453 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 ACTBL2Q562R1 376 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 LAIR2Q6ISS4 152 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 C11orf87Q6NUJ2 197 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 PPP1R27Q86WC6 154 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 ODF3L1Q8IXM7 274 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 FLYWCH2Q96CP2 140 aaKnown RBP9.81□□□□□ -0.84
SNX1-209ENST00000559961 ABHD14BQ96IU4 210 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 PRR25Q96S07 402 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 CLCC1Q96S66 551 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 NICN1Q9BSH3 213 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 IFI27L2Q9H2X8 130 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 FBXL15Q9H469 300 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 ISYNA1Q9NPH2 558 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 ACOT13Q9NPJ3 140 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 ZNF355PQ9NSJ1 428 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 METTL1Q9UBP6 276 aaKnown RBP9.81□□□□□ -0.84
SNX1-209ENST00000559961 AK3Q9UIJ7 227 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 BLOC1S6Q9UL45 172 aa9.81□□□□□ -0.84
SNX1-209ENST00000559961 AK6Q9Y3D8 172 aaKnown RBP9.81□□□□□ -0.84
SNX1-209ENST00000559961 RBM7Q9Y580 266 aaKnown RBP9.81□□□□□ -0.84
SNX1-209ENST00000559961 TRBV6-6A0A0A6YYG2 114 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 DENRO43583 198 aaKnown RBP9.8□□□□□ -0.84
SNX1-209ENST00000559961 SAP30O75446 220 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 NDUFA3O95167 84 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 CNIH1O95406 144 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 IGLV1-40P01703 118 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 CT45A6P0DMU7 189 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 CT45A5P0DMU8 189 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 CT45A7P0DMV0 189 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 CALRP27797 417 aaKnown RBP9.8□□□□□ -0.84
SNX1-209ENST00000559961 PPIFP30405 207 aaKnown RBP9.8□□□□□ -0.84
SNX1-209ENST00000559961 CX3CL1P78423 397 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 UNC119Q13432 240 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 TPBGQ13641 420 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 FHL3Q13643 280 aa9.8□□□□□ -0.84
SNX1-209ENST00000559961 RPL39P5Q59GN2 51 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms