RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ADGRL1O94910 1474 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 MPDZO75970 2070 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 IGKV3D-11A0A0A0MRZ8 115 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 TMED7-TICAM2A0A0A6YYA0 188 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 C17orf98A8MV24 154 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 D6RAR5 112 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 M0QZ92 97 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 CXCR6O00574 342 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 HLA-DRAP01903 254 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 OPN1SWP03999 348 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 IGKV4-1P06312 121 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 LINC00614P0C842 121 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 CD36P16671 472 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 CFL1P23528 166 aaKnown RBP0.79□□□□□ -2.28
USP3-209ENST00000558925 CDK2P24941 298 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 OR1E2P47887 323 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 H2BFSP57053 126 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 DAD1P61803 113 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 MED21Q13503 144 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 TMEM31Q5JXX7 168 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 CST9Q5W186 159 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 ZFAND6Q6FIF0 208 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 SCGB1D4Q6XE38 83 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 SDIM1Q6ZPB5 146 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 NAA40Q86UY6 237 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 COMMD7Q86VX2 200 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 ZNF567Q8N184 647 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 CCDC112Q8NEF3 446 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 OR10P1Q8NGE3 313 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 OR5C1Q8NGR4 320 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 OR2V1Q8NHB1 315 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 CD200R1Q8TD46 325 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 HAVCR2Q8TDQ0 301 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 EEF1AKMT1Q8WVE0 214 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 TLCD1Q96CP7 247 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 OR7D2Q96RA2 312 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 TIPINQ9BVW5 301 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 C1QTNF6Q9BXI9 259 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 KRTAP4-1Q9BYQ7 146 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 MED28Q9H204 178 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 ABCG5Q9H222 651 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 OR51B6Q9H340 312 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 NKIRAS1Q9NYS0 192 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 DNAJC12Q9UKB3 198 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 LTBP2Q14767 1821 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 ZBED9Q6R2W3 1325 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 PLCH2O75038 1416 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 NPATQ14207 1427 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 RIMS2Q9UQ26 1411 aa0.79□□□□□ -2.28
USP3-209ENST00000558925 COL18A1P39060 1754 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 COL5A1P20908 1838 aaPredicted RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 MDFIC2A0A1B0GVS7 189 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 VPS37CA5D8V6 355 aaPredicted RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 A8MWP6 167 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 C21orf140B9A014 251 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 C3orf84H3BNL1 204 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 M0R381 172 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 SYNGR2O43760 224 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 SSNA1O43805 119 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 STX10O60499 249 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 STK16O75716 305 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 IGLV3-27P01718 113 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 IL6P05231 212 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 CTSGP08311 255 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 OR4A8P0C604 315 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 ESDP10768 282 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 ZNF7P17097 686 aaPredicted RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 LGALS3P17931 250 aaKnown RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 CRYBB3P26998 211 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 RPL12P30050 165 aaKnown RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 OR10J1P30954 320 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 SERPINB10P48595 397 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 CTBP2P56545 445 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 TSPEAR-AS2P59090 65 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 SNAP25P60880 206 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 CXCR4P61073 352 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 FGF12P61328 243 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 PSG4Q00888 419 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 MGAT3Q09327 533 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 HTR4Q13639 388 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 GNA13Q14344 377 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 RSU1Q15404 277 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 CST6Q15828 149 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 TAF9Q16594 264 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 SLC36A2Q495M3 483 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 MRPL51Q4U2R6 128 aaKnown RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 PYCR3Q53H96 274 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 HSP90B2PQ58FF3 399 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 KIAA2026Q5HYC2 2103 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 RASL11AQ6T310 242 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 NATD1Q8N6N6 113 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 TMEM161BQ8NDZ6 487 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 OR51H1Q8NH63 302 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 Q8WTZ3 238 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 RNASE6Q93091 150 aaKnown RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 TESCQ96BS2 214 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 TMEM109Q9BVC6 243 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 HIGD2AQ9BW72 106 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 BCL2L14Q9BZR8 327 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 PARVGQ9HBI0 331 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms