RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 TRBV6-7A0A0A0MS04 114 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 HLA-DQB1P01920 261 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 SNRNP70P08621 437 aaKnown RBP11.5□□□□□ -0.57
USP3-205ENST00000557884 SAA2P0DJI9 122 aaPredicted RBP11.5□□□□□ -0.57
USP3-205ENST00000557884 ZNF137PP52743 207 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 RAG2P55895 527 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 HES1Q14469 280 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 HNF4GQ14541 408 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 BEST4Q8NFU0 473 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 EDARADDQ8WWZ3 215 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 MRPL20Q9BYC9 149 aaKnown RBP11.5□□□□□ -0.57
USP3-205ENST00000557884 C6orf62Q9GZU0 229 aaPredicted RBP11.5□□□□□ -0.57
USP3-205ENST00000557884 RAB18Q9NP72 206 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 IFT46Q9NQC8 304 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 EXTL2Q9UBQ6 330 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 ANXA10Q9UJ72 324 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 PITPNC1Q9UKF7 332 aa11.5□□□□□ -0.57
USP3-205ENST00000557884 TMEM89A2RUT3 159 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 ZNF736B4DX44 427 aaPredicted RBP11.49□□□□□ -0.57
USP3-205ENST00000557884 J3QRK9 145 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 LANCL1O43813 399 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 LPLP06858 475 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 PRSS3P35030 304 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 ARPC4P59998 168 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 AWAT1Q58HT5 328 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 RPL39P5Q59GN2 51 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 RNASE12Q5GAN4 147 aaKnown RBP11.49□□□□□ -0.57
USP3-205ENST00000557884 CNIH2Q6PI25 160 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 HOGA1Q86XE5 327 aa11.49□□□□□ -0.57
USP3-205ENST00000557884 SLIRPQ9GZT3 109 aaKnown RBP11.49□□□□□ -0.57
USP3-205ENST00000557884 FAM90A9PA6NNJ1 464 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 ITGB1BP1O14713 200 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 TXNL1O43396 289 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 IGKV1D-33P01593 117 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 IGKV1-33P01594 117 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 OR8U9P0C7N5 309 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 FAM106CPP0CH98 169 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 MDKP21741 143 aaPredicted RBP11.48□□□□□ -0.57
USP3-205ENST00000557884 NFYAP23511 347 aaPredicted RBP11.48□□□□□ -0.57
USP3-205ENST00000557884 CBX5P45973 191 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 RPL15P61313 204 aaKnown RBP11.48□□□□□ -0.57
USP3-205ENST00000557884 LIAT1Q6ZQX7 453 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 Q6ZSV7 163 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 ZNF833PQ6ZTB9 187 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 OR8U1Q8NH10 309 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 SNAPC3Q92966 411 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 S1PR3Q99500 378 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 AGMATQ9BSE5 352 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 SLC25A33Q9BSK2 321 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 PIPOXQ9P0Z9 390 aa11.48□□□□□ -0.57
USP3-205ENST00000557884 DPPA5A6NC42 116 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 RAB29O14966 203 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 NDUFA7O95182 113 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 DIRAS3O95661 229 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 CTXN2P0C2S0 81 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 TMEM11P17152 192 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 GPR12P47775 334 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 FOXL1Q12952 345 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 C12orf54Q6X4T0 127 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 H1FOOQ8IZA3 346 aaPredicted RBP11.47□□□□□ -0.57
USP3-205ENST00000557884 OR4C13Q8NGP0 309 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 OR4F5Q8NH21 305 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 MCFD2Q8NI22 146 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 NABP2Q9BQ15 211 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 ZNF251Q9BRH9 671 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 NPFFR1Q9GZQ6 430 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 TOLLIPQ9H0E2 274 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 ZNF221Q9UK13 617 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 ADAM30Q9UKF2 790 aa11.47□□□□□ -0.57
USP3-205ENST00000557884 RBM7Q9Y580 266 aaKnown RBP11.47□□□□□ -0.57
USP3-205ENST00000557884 SH2D7A6NKC9 451 aaPredicted RBP11.46□□□□□ -0.57
USP3-205ENST00000557884 ZNF701M0R085 212 aaPredicted RBP11.46□□□□□ -0.57
USP3-205ENST00000557884 OR2F2O95006 317 aa11.46□□□□□ -0.57
USP3-205ENST00000557884 LSAMPQ13449 338 aa11.46□□□□□ -0.57
USP3-205ENST00000557884 HABP2Q14520 560 aaPredicted RBP11.46□□□□□ -0.57
USP3-205ENST00000557884 GLDNQ6ZMI3 551 aaPredicted RBP11.46□□□□□ -0.57
USP3-205ENST00000557884 THNSL2Q86YJ6 484 aa11.46□□□□□ -0.57
USP3-205ENST00000557884 GPX8Q8TED1 209 aa11.46□□□□□ -0.57
USP3-205ENST00000557884 RBM14Q96PK6 669 aaKnown RBP11.46□□□□□ -0.57
USP3-205ENST00000557884 OR2D2Q9H210 308 aa11.46□□□□□ -0.57
USP3-205ENST00000557884 SIGLEC9Q9Y336 463 aa11.46□□□□□ -0.57
USP3-205ENST00000557884 CT45A6P0DMU7 189 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 CT45A5P0DMU8 189 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 CT45A7P0DMV0 189 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 CD1BP29016 333 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 LINC00205P59089 165 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 BLCAPP62952 87 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 FOXB2Q5VYV0 432 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 FAM71F2Q6NXP2 309 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 DRAXINQ8NBI3 349 aaPredicted RBP11.45□□□□□ -0.58
USP3-205ENST00000557884 C5orf30Q96GV9 206 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 DIRAS2Q96HU8 199 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 EAF1Q96JC9 268 aaPredicted RBP11.45□□□□□ -0.58
USP3-205ENST00000557884 AKR1E2Q96JD6 320 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 ABHD1Q96SE0 405 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 NXF2Q9GZY0 626 aaKnown RBP11.45□□□□□ -0.58
USP3-205ENST00000557884 ZNF702PQ9H963 129 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 SCPEP1Q9HB40 452 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 BEX1Q9HBH7 125 aa11.45□□□□□ -0.58
USP3-205ENST00000557884 NECAP2Q9NVZ3 263 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms