RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CHMP1AQ9HD42 196 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 SMAD5-AS1Q9Y6J3 95 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 A0A1W2PN81 502 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 OR5H14A6NHG9 310 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 OVOL1O14753 267 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 NAPSAO96009 420 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 GSTP1P09211 210 aaKnown RBP8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 SRMP19623 302 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 HTR2CP28335 458 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 CHRNA7P36544 502 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 UNC119Q13432 240 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 RCN1Q15293 331 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 HSD17B12Q53GQ0 312 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 RPL39P5Q59GN2 51 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 C1orf100Q5SVJ3 147 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 FAM27D1Q5T7N8 215 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 ZNF660Q6AZW8 331 aaPredicted RBP8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 LRRTM1Q86UE6 522 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 ZNF429Q86V71 674 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 SVOPQ8N4V2 548 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 TCTEX1D1Q8N7M0 179 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 ABHD5Q8WTS1 349 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 FBLIM1Q8WUP2 373 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 PHYHIPQ92561 330 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 DCUN1D4Q92564 292 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 NICN1Q9BSH3 213 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 TM2D1Q9BX74 207 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 GHITMQ9H3K2 345 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 KCNK15Q9H427 330 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 FBXL15Q9H469 300 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 ISYNA1Q9NPH2 558 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 PLEKHJ1Q9NW61 149 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 FKBP14Q9NWM8 211 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 SLC23A1Q9UHI7 598 aa8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 FOXA2Q9Y261 457 aaPredicted RBP8.59□□□□□ -1.03
CCDC88C-213ENST00000557455 LINC01619G3V211 115 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 H7C2Y5 167 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 RRHO14718 337 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 SAP30O75446 220 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 CDK1P06493 297 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 CT45A6P0DMU7 189 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 CT45A5P0DMU8 189 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 CT45A7P0DMV0 189 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 MC5RP33032 325 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 CRIP2P52943 208 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 CX3CL1P78423 397 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 NDPQ00604 133 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 TMEM267Q0VDI3 215 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 OGFRL1Q5TC84 451 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 RNLSQ5VYX0 342 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 ZNF880Q6PDB4 577 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 GLDNQ6ZMI3 551 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 MOB1BQ7L9L4 216 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 CEACAM19Q7Z692 300 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 CASTOR1Q8WTX7 329 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 ABHD14BQ96IU4 210 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 TOLLIPQ9H0E2 274 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 ALX4Q9H161 411 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 RIMS4Q9H426 269 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 RNF150Q9ULK6 438 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 FBXO7Q9Y3I1 522 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 A3GALT2U3KPV4 340 aa8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 HUWE1Q7Z6Z7 4374 aaKnown RBP8.58□□□□□ -1.04
CCDC88C-213ENST00000557455 TMEM14DPA8MWL7 114 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 PTGES3LE9PB15 166 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 H0YJW9 148 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 ITGB1BP1O14713 200 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 SLC22A1O15245 554 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 HSPA12AO43301 675 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 SOX15O60248 233 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 RBBP9O75884 186 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 BPNT1O95861 308 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 ZBTB25P24278 435 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 CEACAM6P40199 344 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 SLURP1P55000 103 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 SPHARQ15513 63 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 MED22Q15528 200 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 C19orf54Q5BKX5 351 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 PYHIN1Q6K0P9 492 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 PPP1R27Q86WC6 154 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 OR6M1Q8NGM8 313 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 EDARADDQ8WWZ3 215 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 DLX4Q92988 240 aaPredicted RBP8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 URM1Q9BTM9 101 aaKnown RBP8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 PARP12Q9H0J9 701 aaKnown RBP8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 VCXQ9H320 206 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 AK3Q9UIJ7 227 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 WASHC3Q9Y3C0 194 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 NUBP2Q9Y5Y2 271 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 DNAH7Q8WXX0 4024 aa8.57□□□□□ -1.04
CCDC88C-213ENST00000557455 A0A0A6YYD4 124 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 TRBV6-6A0A0A6YYG2 114 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 C3orf84H3BNL1 204 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 FCN1O00602 326 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 CASQ2O14958 399 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 SOCS1O15524 211 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 LGALS1P09382 135 aaKnown RBP8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 UCHL1P09936 223 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 CD37P11049 281 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 ARSBP15848 533 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms