RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 DEFA4P12838 97 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 IDH3GP51553 393 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF826PQ6ZT77 177 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 LINC00596Q86U02 117 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF808Q8N4W9 903 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF610Q8N9Z0 462 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 CA5BP1Q8WTZ4 195 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 BCL2L2Q92843 193 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-213ENST00000552720 TCEAL7Q9BRU2 100 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 GPR61Q9BZJ8 451 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 PKIBQ9C010 78 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 TOLLIPQ9H0E2 274 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 SPRR3Q9UBC9 169 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 CADP27708 2225 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 DMXL2Q8TDJ6 3036 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 TMEM265A0A087WTH1 108 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 CEBPZOSA8MTT3 80 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 WNT9BO14905 357 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 WISP2O76076 250 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 NXPH2O95156 264 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 KRASP01116 189 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 SP1P08047 785 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 FOSL1P15407 271 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 G6PCP35575 357 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 CDX1P47902 265 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-213ENST00000552720 RAB2AP61019 212 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 RPL30P62888 115 aaKnown RBP6.32□□□□□ -1.4
LIMA1-213ENST00000552720 PMP22Q01453 160 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF816Q0VGE8 651 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-213ENST00000552720 LRRC75BQ2VPJ9 315 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 SPINK9Q5DT21 86 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 DMRTA1Q5VZB9 504 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 TMPRSS7Q7RTY8 843 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 SLC35E3Q7Z769 313 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 GCNT2Q8N0V5 402 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 FGFRL1Q8N441 504 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 OR1L1Q8NH94 360 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 ABHD5Q8WTS1 349 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 FRZBQ92765 325 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 LSM10Q969L4 123 aaKnown RBP6.32□□□□□ -1.4
LIMA1-213ENST00000552720 STRADBQ9C0K7 418 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 RBKSQ9H477 322 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 TMEM9BQ9NQ34 198 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 TRAV1-1A0A0B4J248 108 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 LNP1A1A4G5 178 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 MAP1LC3B2A6NCE7 125 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 NPIPB11E5RHQ5 1161 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 SMPD2O60906 423 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 LYZL6O75951 148 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 TRGC1P0CF51 173 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 SLC25A6P12236 298 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 MDH2P40926 338 aaKnown RBP6.31□□□□□ -1.4
LIMA1-213ENST00000552720 OR3A1P47881 315 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 ERVK11-1P61568 191 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 FBXW9Q5XUX1 488 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 BTNL3Q6UXE8 466 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 DPPA3Q6W0C5 159 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 RPP25LQ8N5L8 163 aaKnown RBP6.31□□□□□ -1.4
LIMA1-213ENST00000552720 TPRX1Q8N7U7 411 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 OR52L2PQ8NGH6 319 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 SNIP1Q8TAD8 396 aaKnown RBP6.31□□□□□ -1.4
LIMA1-213ENST00000552720 SLC25A40Q8TBP6 338 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 GATAD1Q8WUU5 269 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 MAP1LC3BQ9GZQ8 125 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 WDR61Q9GZS3 305 aaKnown RBP6.31□□□□□ -1.4
LIMA1-213ENST00000552720 CISD1Q9NZ45 108 aaKnown RBP6.31□□□□□ -1.4
LIMA1-213ENST00000552720 CLN8Q9UBY8 286 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 CLDN1O95832 211 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 S100PP25815 95 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 MPLP40238 635 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 PPP1CBP62140 327 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 AESQ08117 197 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 SLC38A11Q08AI6 406 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 C9orf152Q5JTZ5 239 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 ACSM6Q6P461 480 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 Q6ZR03 302 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 OR10D4PQ8NGN7 298 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 MBD3L1Q8WWY6 194 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 FAM210BQ96KR6 192 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 GUCD1Q96NT3 240 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 DDA1Q9BW61 102 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 RTL8AQ9BWD3 113 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 OR2D2Q9H210 308 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 HIPK2Q9H2X6 1198 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 OPA3Q9H6K4 179 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 LIN7CQ9NUP9 197 aaKnown RBP6.31□□□□□ -1.4
LIMA1-213ENST00000552720 TINAGQ9UJW2 476 aa6.31□□□□□ -1.4
LIMA1-213ENST00000552720 IGHV3-43A0A0B4J1X8 118 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 PGA5P0DJD9 388 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 IGHV3-43DP0DP04 118 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 MPV17P39210 176 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 BRWD1-AS2P59051 145 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 CD81P60033 236 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 PSG7Q13046 419 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 SLC10A1Q14973 349 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 CLEC12BQ2HXU8 276 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 WDR25Q64LD2 544 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-213ENST00000552720 DBX2Q6ZNG2 339 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 NECAP1Q8NC96 275 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 MDS2Q8NDY4 140 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms