RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	ST6GALNAC6	Q969X2	333 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	CITED2	Q99967	270 aa	Predicted RBP	6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	TM2D1	Q9BX74	207 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	GNG12	Q9UBI6	72 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	JPT1	Q9UK76	154 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	IGHV3-43	A0A0B4J1X8	118 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440		A0A1W2PPE3	182 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	TMEM14DP	A8MWL7	114 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	SLC17A2	O00624	439 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	HBZ	P02008	142 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	GAPDH	P04406	335 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	IGHV3-43D	P0DP04	118 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	RCC1	P18754	421 aa	Predicted RBP	6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	BTF3	P20290	206 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	VHL	P40337	213 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	RANBP1	P43487	201 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	RPS25	P62851	125 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	QRFP	P83859	136 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	HTD2	P86397	168 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	NSUN5P1	Q3KNT7	163 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	KPRP	Q5T749	579 aa	Predicted RBP	6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	HIST2H2BD	Q6DRA6	164 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	TMEM91	Q6ZNR0	172 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	MOB1B	Q7L9L4	216 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	ZNF367	Q7RTV3	350 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR2W3	Q7Z3T1	314 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR1L1	Q8NH94	360 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	IL17D	Q8TAD2	202 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	UBALD1	Q8TB05	177 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	TMEM203	Q969S6	136 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	CNBD2	Q96M20	576 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	NEDD4L	Q96PU5	975 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	MGLL	Q99685	303 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	CCDC90B	Q9GZT6	254 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	TAF9B	Q9HBM6	251 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	KCNIP1	Q9NZI2	227 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	RAB26	Q9ULW5	256 aa		6.08	□□□□□ -1.44
SNHG1-223	ENST00000545440	SH2D7	A6NKC9	451 aa	Predicted RBP	6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	SLC31A2	O15432	143 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	LANCL1	O43813	399 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	RGS11	O94810	467 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	NAPSA	O96009	420 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	ARSB	P15848	533 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	CD1B	P29016	333 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	REG1B	P48304	166 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	GABARAPL2	P60520	117 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	FABP5	Q01469	135 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	HMGN3	Q15651	99 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	MORN2	Q502X0	79 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	TCTEX1D4	Q5JR98	221 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	C9orf152	Q5JTZ5	239 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	LY6G6F	Q5SQ64	297 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR10K2	Q6IF99	312 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	FAM53A	Q6NSI3	398 aa	Predicted RBP	6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	CENPV	Q7Z7K6	275 aa	Predicted RBP	6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	MOB3B	Q86TA1	216 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	TGIF2LX	Q8IUE1	241 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	LYG1	Q8N1E2	194 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440		Q8N6K4	173 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	RNF152	Q8N8N0	203 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR8H1	Q8NGG4	311 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR10V1	Q8NGI7	309 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR2T10	Q8NGZ9	312 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	CHPT1	Q8WUD6	406 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	R3HDM4	Q96D70	268 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	GFI1	Q99684	422 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	SULT4A1	Q9BR01	284 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	NICN1	Q9BSH3	213 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	URM1	Q9BTM9	101 aa	Known RBP	6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	ABHD14A	Q9BUJ0	271 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	WDR12	Q9GZL7	423 aa	Known RBP	6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	KCNK15	Q9H427	330 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	PLGRKT	Q9HBL7	147 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	ACOT13	Q9NPJ3	140 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR2S2	Q9NQN1	319 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	LIN7C	Q9NUP9	197 aa	Known RBP	6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	NDUFB11	Q9NX14	153 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	LRRC42	Q9Y546	428 aa		6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	TSSC4	Q9Y5U2	329 aa	Predicted RBP	6.07	□□□□□ -1.44
SNHG1-223	ENST00000545440	PRKDC	P78527	4128 aa	Known RBP	6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	TRBV6-6	A0A0A6YYG2	114 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	TCRBV4S1A1T	A0A5B7	111 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	PSMB11	A5LHX3	300 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	YPEL1	O60688	119 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	MRPS14	O60783	128 aa	Known RBP	6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	ATP6V1G2	O95670	118 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	MOS	P00540	346 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	IGHG2	P01859	326 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	ELANE	P08246	267 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	CALR	P27797	417 aa	Known RBP	6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	BLVRB	P30043	206 aa	Predicted RBP	6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	MAP2K4	P45985	399 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	PSMD7	P51665	324 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	ZNF134	P52741	427 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	HNF4G	Q14541	408 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	GNMT	Q14749	295 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	RAB11B	Q15907	218 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	CT45A1	Q5HYN5	189 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	FAM71F2	Q6NXP2	309 aa		6.06	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms