RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 OR2W1Q9Y3N9 320 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 HILPDAQ9Y5L2 63 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 OOSP1A8MZH6 123 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 LANCL1O43813 399 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 TUSC2O75896 110 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 OR8U9P0C7N5 309 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 ZNF137PP52743 207 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 VAX1Q5SQQ9 334 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 TPTE2P1Q5T6R2 138 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 OR8U1Q8NH10 309 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 RPEQ96AT9 228 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 MEGF9Q9H1U4 602 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 OCEL1Q9H607 264 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 RBM7Q9Y580 266 aaKnown RBP13.85□□□□□ -0.19
LIG1-204ENST00000542460 RAB29O14966 203 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 CD74P04233 296 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 LUMP51884 338 aaPredicted RBP13.85□□□□□ -0.19
LIG1-204ENST00000542460 LSAMPQ13449 338 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 RNASE10Q5GAN6 216 aaKnown RBP13.85□□□□□ -0.19
LIG1-204ENST00000542460 RBMS3Q6XE24 437 aaKnown RBP13.85□□□□□ -0.19
LIG1-204ENST00000542460 ODF3L1Q8IXM7 274 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 DYNAPQ8N1N2 210 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 OR6F1Q8NGZ6 308 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 TOMM40LQ969M1 308 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 ZDHHC16Q969W1 377 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 ST6GALNAC6Q969X2 333 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 ZNF48Q96MX3 618 aaPredicted RBP13.85□□□□□ -0.19
LIG1-204ENST00000542460 ZNF221Q9UK13 617 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 RNF150Q9ULK6 438 aa13.85□□□□□ -0.19
LIG1-204ENST00000542460 MDFIC2A0A1B0GVS7 189 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 ANKRD20A5PA0PJZ0 165 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 M0QYG6 137 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 HSD17B6O14756 317 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 GAPDHP04406 335 aaKnown RBP13.84□□□□□ -0.19
LIG1-204ENST00000542460 IFNA6P05013 189 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 TSPAN5P62079 268 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 CCDC144NLQ6NUI1 221 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 STEAP1BQ6NZ63 245 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 SIGLECL1Q8N7X8 197 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 ZNF418Q8TF45 676 aaPredicted RBP13.84□□□□□ -0.19
LIG1-204ENST00000542460 TRIM63Q969Q1 353 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 ABHD14BQ96IU4 210 aa13.84□□□□□ -0.19
LIG1-204ENST00000542460 TINAGL1Q9GZM7 467 aaPredicted RBP13.84□□□□□ -0.19
LIG1-204ENST00000542460 SAA2-SAA4A0A096LPE2 208 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 RAB3DO95716 219 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 PPYP01298 95 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 AKAIN1P0CW23 69 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 SAA2P0DJI9 122 aaPredicted RBP13.83□□□□□ -0.2
LIG1-204ENST00000542460 AADACP22760 399 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 PAX6P26367 422 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 GPR12P47775 334 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 ARHGDIBP52566 201 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 AP3S2P59780 193 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 ZNF816Q0VGE8 651 aaPredicted RBP13.83□□□□□ -0.2
LIG1-204ENST00000542460 DIAPH2-AS1Q14236 149 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 MEF2DQ14814 521 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 BAK1Q16611 211 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 AANATQ16613 207 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 ZNF660Q6AZW8 331 aaPredicted RBP13.83□□□□□ -0.2
LIG1-204ENST00000542460 Q6YL49 198 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 TMEM17Q86X19 198 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 LDLRAD3Q86YD5 345 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 TOMM5Q8N4H5 51 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 ARRDC1Q8N5I2 433 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 S1PR3Q99500 378 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 SDHCQ99643 169 aaPredicted RBP13.83□□□□□ -0.2
LIG1-204ENST00000542460 ZNF2Q9BSG1 426 aaPredicted RBP13.83□□□□□ -0.2
LIG1-204ENST00000542460 OR2D2Q9H210 308 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 GAB2Q9UQC2 676 aa13.83□□□□□ -0.2
LIG1-204ENST00000542460 J3QRK9 145 aa13.82□□□□□ -0.2
LIG1-204ENST00000542460 TXNL1O43396 289 aa13.82□□□□□ -0.2
LIG1-204ENST00000542460 PPP5CP53041 499 aa13.82□□□□□ -0.2
LIG1-204ENST00000542460 TRIQKQ629K1 86 aa13.82□□□□□ -0.2
LIG1-204ENST00000542460 FAM71F2Q6NXP2 309 aa13.82□□□□□ -0.2
LIG1-204ENST00000542460 ZNF833PQ6ZTB9 187 aa13.82□□□□□ -0.2
LIG1-204ENST00000542460 TGIF2LXQ8IUE1 241 aa13.82□□□□□ -0.2
LIG1-204ENST00000542460 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.82□□□□□ -0.2
LIG1-204ENST00000542460 ZFAND2BQ8WV99 257 aa13.82□□□□□ -0.2
LIG1-204ENST00000542460 RTN4IP1Q8WWV3 396 aaPredicted RBP13.82□□□□□ -0.2
LIG1-204ENST00000542460 WDR12Q9GZL7 423 aaKnown RBP13.82□□□□□ -0.2
LIG1-204ENST00000542460 SLC22A5O76082 557 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 CD40LGP29965 261 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 REG1BP48304 166 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 HERV-K104P61576 105 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 ZNF846Q147U1 533 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 OR8H3Q8N146 312 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 OR4D10Q8NGI6 311 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 DEDD2Q8WXF8 326 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 ZNF251Q9BRH9 671 aa13.81□□□□□ -0.2
LIG1-204ENST00000542460 IGKV1D-13A0A0B4J2D9 117 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 IGHV1-3A0A0C4DH29 117 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 IGKV1-13P0DP09 117 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 BRS3P32247 399 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 IER3P46695 156 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 INPP1P49441 399 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 DYNLT3P51808 116 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 FXYD4P59646 89 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 BAMBIQ13145 260 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 KLF9Q13886 244 aaPredicted RBP13.8□□□□□ -0.2
LIG1-204ENST00000542460 LRRC75BQ2VPJ9 315 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms