RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 NEURL1O76050 574 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 IGHG1P01857 330 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 GAPDHP04406 335 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 P04436 131 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 FUT3P21217 361 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 RBMXP38159 391 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 OR3A2P47893 321 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 ZNF133P52736 654 aaPredicted RBP6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 MORN2Q502X0 79 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 ASCL4Q6XD76 172 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 OR52L2PQ8NGH6 319 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 FNDC9Q8TBE3 224 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 TVP23CQ96ET8 276 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 ABHD14AQ9BUJ0 271 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 C14orf166Q9Y224 244 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 CHD3Q12873 2000 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 RNF212BA8MTL3 300 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 HSD17B6O14756 317 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 BMP5P22003 454 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 CFPP27918 469 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 RND3P61587 244 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 CLEC12BQ2HXU8 276 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 TCTEX1D4Q5JR98 221 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 KCTD18Q6PI47 426 aaPredicted RBP6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 TMEM123Q8N131 208 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 SPACA5Q96QH8 159 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 ERRFI1Q9UJM3 462 aaPredicted RBP6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 LHFPL6Q9Y693 200 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 R4GMQ9 66 aa6.84□□□□□ -1.31
PDLIM5-221ENST00000542407 IGHV3-15A0A0B4J1V0 119 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 TNFSF11O14788 317 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 HS3ST1O14792 307 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 TNFRSF6BO95407 300 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 SEC11BP0C7V7 166 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 GLI4P10075 376 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 PSG1P11464 419 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 ZNF43P17038 809 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 SSTR5P35346 364 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 GLIPR1P48060 266 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 CLDN15P56746 228 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 CLRN1P58418 232 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 RHOGP84095 191 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 SMAGPQ0VAQ4 97 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 PDCD1Q15116 288 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 WDR25Q64LD2 544 aaPredicted RBP6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 DTX1Q86Y01 620 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 TMEM183AQ8IXX5 376 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 ZIC4Q8N9L1 334 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 NHLRC2Q8NBF2 726 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 OR5H2Q8NGV7 314 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 TMEM54Q969K7 222 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 SIGLEC12Q96PQ1 595 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 RTBDNQ9BSG5 229 aaPredicted RBP6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 PSG8Q9UQ74 426 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 UFC1Q9Y3C8 167 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 TTC28Q96AY4 2481 aa6.84□□□□□ -1.32
PDLIM5-221ENST00000542407 RBFOX2O43251 390 aaKnown RBP eCLIP6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 DEDDO75618 318 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 AMY2BP19961 511 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 GFRA1P56159 465 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 ARFRP1Q13795 201 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 SPINK14Q6IE38 97 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 FOXL2NBQ6ZUU3 175 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 SGPP2Q8IWX5 399 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 DEFB124Q8NES8 71 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 PRSS33Q8NF86 280 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 SSBP4Q9BWG4 385 aaPredicted RBP6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 PNRC2Q9NPJ4 139 aaKnown RBP6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 FAM206AQ9NX38 181 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 EMC9Q9Y3B6 208 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 WSB1Q9Y6I7 421 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 FREM3P0C091 2139 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 IFNL4K9M1U5 179 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 DNPH1O43598 174 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 FTH1P19P0C7X4 201 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 MMP9P14780 707 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 ZNF823P16415 610 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 CDAP32320 146 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 CDKN1AP38936 164 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 CLDN17P56750 224 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 UNC119Q13432 240 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 C10orf128Q5T292 105 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 FBXW12Q6X9E4 464 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 NECAP1Q8NC96 275 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 CABLES2Q9BTV7 478 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 PPIAL4AQ9Y536 164 aa6.83□□□□□ -1.32
PDLIM5-221ENST00000542407 DOCK10Q96BY6 2186 aa6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 ZNF705FA8MVS1 300 aaPredicted RBP6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 MPIG6BO95866 241 aa6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 ISG15P05161 165 aa6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 CHRM2P08172 466 aa6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 FAM87AP0C7U9 286 aa6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 ZNF705DP0CH99 300 aaPredicted RBP6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 ZNF705BP0CI00 300 aaPredicted RBP6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 IGFBP3P17936 291 aaPredicted RBP6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 KITLGP21583 273 aa6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 UCP2P55851 309 aa6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 SRSF6Q13247 344 aaKnown RBP6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 VAMP3Q15836 100 aa6.82□□□□□ -1.32
PDLIM5-221ENST00000542407 WDR82Q6UXN9 313 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms